G31218


Basic Information

Item Value
gene id G31218
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 2404414 ~ 2409880 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39093
AGACCGCCATCATCCCAACACCCCCCCGTCGCACCCCTGGAGATCAGCATGCTGGGCTGCTGCTCATCGGGGAGCGGAGAGCACCTTCAGCTCTCATCATCACGAACCACGGCTATAATGAATCACTCCCAGCCTGCAGAGTGGCTGGATCTGAAGCATGCAAGCACAAAACCCCCCCGGCTTCCTACTGATTCACGCCCGAGTGTGGGGTTCGAAATCAAAGCCCTCCTGACCACAGAGGCCACGAAACGCCAGACCAATCCCTGTATATGCTGTACAGTGAACTCATAACATTAGTTTCACCAACGAGGAAGCATgcttattattactactagtgttaaatttttttaaaaaactcACATCCTAAAGCATGCTGGTACCTGTAGTCCTACGTCAGCAGGAACGATGGAAGCAGAATCTCGCAGCTGTGACTGAAGGGGAAGGTATTTCTCCCTGGCCTCCTCACAGGCGGGGCTGCCAGTTGTTTACAGCGGTGTGTCCAGACTGACCCTGCGCTTCGGAGGACACACGGCCAACGTCCTCGAGCCCCTTTGACTCTGCCTTTGCCGACATGTTGGACATGGTCACCACTAAACATTCAAATAAGGTTCTCCCTTGTCAAAAACGCcagctctcctctctcccaGAAGCCACCTCTCTGGGACTGCACCCCCACCGCTCCTCTCCCCATCGCCGTCAGTGGGACATGGGAACTGAAAAGACTGCAAGCAGGTGTTTATAGTTCTGTCCATTGATCCATCAATCAATCTTTATCTGATATATAGCGCCCTCCCcaaaataatttcacagcaATGCTTTGCAGGGCGATGTAAAGTACGAGTCAGTGGGCATGGTGAGTTCAGACAAGGGGGAGCTTCGAGACATTAGAGAGAGGCTGAACAGAAACGAGTGCCAGTAtctggaaaacatttattttccccccattaTAAAGCTGACGGGTGTGTGCGAGTCTGAGTGAATGGGGCCCTTGAGGTTACAGCAGTGCCACATTCCTCGCTGCGTTATGGGAAAGCCTGGCCCGAAGAGAACAGCCAGTGCTGTGTTTGACTGCCGCTGGCGTGCCGCCCGCCTCTGACCTCATGCGCTCGCCGTCTACGCCCCCCTCCGCCTGTGGCAACGCAAGAGGCTCTAATGCAGCCCCGTAGAGTCACTGCTCCGGAAATGTCTGCattacatgattattttcaCTCTGACGTGGTGACACGGCCGGGTCTGACCTCCTCCTCCAGGCATGTGATCTGTGCTCCAGTCCGCTGGCGTTCGCACTGCACTCCTGTTTGATGGTGCAGGTTTGTCTGTATCATAACTGACTACAGCCCAGTGCCCCACAGCCACCCCTCTGCAGTGCAGTCAGCGCAGCAGGTGCCGAAACCCTGGCCAGCCACAAGATGGCGCCAGTGACAGCATCGGCCCTTTTAGTGCTCCATCGTACAGGCAGGATGTAGGAGAGCTGGAGGGCTCATTGGTGCTGCTGTTCGTCAAACAGGCAAACTGTGCTTTTATTCCTGATAGAAATCTGAACTTGTCCTCTTGTATTTATAACACAGAAGGTACCTTGACTATAGGATACGTAATTAACAGAATAACAGACTAAAATAATCTGCAGTTGTCCAGATAAACACAGGAGGTAGGTGAGGGCACTCTCCACAGCATCACCAAGCTGCGATGAGTCACTGCCACTGGGGTGTTCAGGGCAAGAGAAAACCCCCATCCCTCTGAACCCTCAGCATTCACAATGTGCTGATCTTTGCGTTGGTTTTTTATTTTCGTGTGCTTATTATTTGTAGCCAGTGTGGAGAAGTGAAGCATTTCCACTCTGtcacactgaaaagaaaaactagaTCCGGTAGAAGCATCGGGCTGTATTTTAATAGGTGTTACAACATGTCGGCCTCCCCGCCCCGCCACCCCCCCACGGTCCGTATGTCTGTGCCGTGTTCGTTCGGTGTTCGCTGTAACCCAGGCTGCCGTGTGAGATAATTAACAGATTGGTTCATTGCGGAGAGGTTCTGAGCAGTAAAGCTGAAGGCTGTCACTGAGCTGGCCAGTCCAGTGGGAGAGGTTGCTCGGTGTGTCATGGGCTTTTAGAAGCTGTTTCCATGCCAAACGTATTGTGCACCACAGCCAAATTCActctttaatgtattaaaaagtcATCCTTGTCCATCTTGCACAAAGTCCCCTGAGTGCAGCACTATCACTGGGGGGTATTATTACTCCACTGTCACCCACCGCATCATGAAGTTGTGCTGTGGCTCTGGCTGTATTCGAGGGGAATGCTGGCAATCCACGGCACACTCTCGACTGCCAGACAGCCCCGGGCAAATGAGCAATCGTGCTCAATCGTTTCAATCTACTGTCTTTAACCACAAGCATGACCAAGTGCactaaagagaaagaaagaaatgtagcAGAAATGTGTAGCAAAAAGAGTTTGGTAACTTAGAATCACGTACAGTCAGTTTGCTGACCCTGTCAAATCAGCTCAACTGTATATGTGAGTCGCTaaaagagagggaagagagtTTTGCTAAACTGCCTCCAGAACGCTGCTTGTTCAGTAACTGGACGGTCTGCAGTCGCCCCGGTGTGCAGGGAGACGGGCCGCCACTGAGAATGGGGGATTGTGGGGAATGAAGCCTCTGCAAGCCTGTTAGGATCCCCAGCCTTGGGCGTtaatagaaaaaacaactgATAATTTCTCAATCAGCCACTTGATCTGATGATTGTACTGTGAtggaaaatgaaggaaaaaaatgctttggagTTTGTTTCTCTTGTTGTTCTTTGACAGAAATGAGAGGGTTCTGCCACCCTTTCACTGGGGGGGTCAGGAAGCAGTGGCGCTTTGTTCTGGGCGTTTCTCTTTTATGTTTCTCTGTGGCGGTGGCAGCGGTGGGCCACGGCATCAGGCCAAAGTTGGAGCCCCCCCTGGGAGAACGAAGGCCGCACTGACTTAAGAAAGTGTGACTCACGGTGAGCAGTGACTACCCTTCTGTGCTGAGATAGCGGGTCCCTCTGGCACTGTTCCCCATCTCTGAAGCGGCCCAGTGGCCACGTGTGAGCGACTCTGCCCGGTTTGgttttggtgtgttttgtttttctgttttgtttttctgaaatgtgaGCCTTAATCACACAGTGTCTGCGCAGCGGCAGCCCGGCGTTGCTGGCGTCTGATTGTACTTCGTAGTCCCTGTGTGCGTGCTTGTCCACCATGTCATCACATAGCGGTGTCCACTTAGAGACGTACAAATTgtgttctaaaataataataataataataaataaaaaacgttGAAAACGCTACTTTGACATGAGACGCCCAGCTGgcaaagggatttttttttttttttctttcttggtttGATTTTTGCAACCTATGCATGCCGCATGGACACGTTTTGAAggaaaagaataatacaattatcttGTTTTTGACATGAAGCAAGATCCACAGGAGGGCAGTAATCTCTCTCACAGCCCCGCGGGACAGACGCCCACCCCCTCTCCGACTCGAGAGCCGAAAGCTCTGTCTGTGCTGATGAGAGGGTGAATAAGGACGAGAGTCTTCAGCTGAGACACCCCCAGCAAAGACCGAGGGCCAGCCAGGACTCTACTTTCCCAAAAGTCAGCTTGTAATGTgatgggagggagagggggcacGTGCTGTGGTGCCAATAGCCAGCCGAGGCTCTGTCTGACCCGCGGGTTTACGGCTCCTGTGCTACAGACTCATCCCTGGAGTTGCTAcgtttgttttctaaaaaaaagcacagatcaCGTCAGACACGGAGGCGGAGCTAGAGTGTGGCCTTTTCGTGGACAACCGGCCCGACAGGCAGCTGAACAGCAGTCTGTGCGTATTATTGTCTGCATGGGGGTGCCGAAAAAGTGCAGGATCCCCCCACTGCCCAgcaactggactggactgcaacTCCTGCTCCTTGTGGGACTcgtgagacagacagagagaggagggtggGGCTCTAATCAATGTACAGCACCCAGGCTACATTAAAGAGAgcgaaaggcgctatataaatatgaactGTGTTGTGATTTCAGTGTATTAGGAAGGCGTGTacagagggaaagggagagagaggaagataCAGTTACAGCTGTGACTTACTGAGACCGCTTGGATGTACATGACAGTAGCGTTTGCCAAAGCTTGAACCTGTGAGGCACTCTAGGGTACGTGTCTTTTATGTGTAACTCTttctgtgtttagttttttggttgGGTTGGAGGtttggggaaagaaaacaaaagcattattGCATCCTGTCCTCGTGTCCCATTTTGTGTTGAAGGGCACTAaatcctccctcctcccccgGTCCTCctctcctgactgcagctgggGGTTTACATAGAAGTGTACTAACACCAAAACCAACAAGAAAGAGGAACTAGCCTGATCTTAATATGGCCCCCGAGACTAATCCAGTTCGATGTGGTTTATTAGTGGAAAGAAATGGAATCAACAAAATGTAGGCTTCCGATCTGTAACCAAAAATCTCATCCTTCTCTTCTGAAGagtaattaactttttataatgataataatgaagtaGTCAGAGTTGAATCACTTGGCCTTCTGGTCCTGCGGAcgcccacacacacaagcagccGTCTCTCCACTGACTCCTGGCACCACGGGGTGTATCGATGTGTTTTGCAGGTTCTGTTGCAATAATACATTGTTCTTGTCCAGGAAAAAAACGATCTGTTGTTggggttttatgtttttgataaCATAATGGTGCCCGTACCGTGTTGGCAAAGGAAGGCGGAGTGAGAACCGGGAGGCAGGGTAATTGCAGGCCTCATTCTTCACCGCAGTTTGGGAATAGCAGCTTTATCCAGGGCATCCCTCCGAGGCatttcacaacaaacaaacaaaaacaaaacttatgtggcaaattataattaaaggcaaaagaaaactaaaaaaatgtgtaaGCTAGCGGGGGTTTAGATTCCAGTGCCTGAGAACCACAGTCTTCTGGGATTGGCTTTCCATCCCCACATCTGGACggatatatttattcatttaaacgTGCTGCGGGCAAATTTAACGCagcttttttttggttgttgttgttctgctgGCTCGtctgtttctcctctctctgAGCTCTGATGCGAATCGGGGGCGCCAGTTTGGCGTGTCGTGTACTTCTCTGTACTGTAGATTCACATCGCAGAGAGCCGCGCTTCTCCTGCCGCACTAAATGGGCTCAGTTACGCCGTGAAGAAGATGTGGCTGGTGAGGGCTGGAGCCAGACCCCCGTTCCAATCAGTATTAAGACGTCAAACTAATCCTTTTCTAAATCTTGCaggaaagtgtgttttttttgtttgtttttgggttGGGGTTCCCCCCCTACAAGTTGTACAGGTGATCCATAACTGAGAGCGTCCTGCTGGTTGTAAag

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion

RNA

RNA id representative length rna type GC content exon number start site end site
TU39093 True 5467 lncRNA 0.50 1 2404414 2409880

Neighbor

gene id symbol gene type direction distance location
AMCG00019077 abcf2 coding downstream 17265 2380537 ~ 2387149 (-)
AMCG00019079 NA coding downstream 46559 2342598 ~ 2357855 (-)
AMCG00019080 NA coding downstream 92014 2303870 ~ 2312400 (-)
AMCG00019078 NA coding downstream 105746 2291500 ~ 2298668 (-)
AMCG00019073 NA coding downstream 169897 2208790 ~ 2234517 (-)
AMCG00019084 smarcd3,LOC106578675 coding upstream 60 2409940 ~ 2434075 (-)
AMCG00019085 NA coding upstream 61584 2471464 ~ 2484739 (-)
AMCG00019087 NA coding upstream 111033 2520913 ~ 2525129 (-)
AMCG00019092 NA coding upstream 228620 2638500 ~ 2657544 (-)
AMCG00019091 arf1,arf3,LOC103038497,LOC102781726,LOC107671731 coding upstream 266435 2676315 ~ 2686173 (-)
G31137 NA non-coding downstream 227448 2176162 ~ 2176966 (-)
G31021 NA non-coding downstream 342453 1975704 ~ 2061961 (-)
G31074 NA non-coding downstream 523231 1870371 ~ 1881183 (-)
G31075 NA non-coding downstream 530066 1872745 ~ 1874348 (-)
G31064 klhl18,LOC107657445 non-coding downstream 552821 1849538 ~ 1851593 (-)
G31234 NA non-coding upstream 64804 2474684 ~ 2474983 (-)
G31236 NA non-coding upstream 70058 2479938 ~ 2480415 (-)
G31244 NA non-coding upstream 83957 2493837 ~ 2494055 (-)
G31245 NA non-coding upstream 84836 2494716 ~ 2496567 (-)
G31246 NA non-coding upstream 90253 2500133 ~ 2509194 (-)
G31130 NA other downstream 225764 2177980 ~ 2178650 (-)
G31082 NA other downstream 321143 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 507982 1882454 ~ 1896432 (-)
G31035 NA other downstream 693871 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 1080818 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 1810563 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 2522469 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 2531179 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 4270745 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 6437271 8847151 ~ 8901878 (-)

Expression


Co-expression Network