G31454


Basic Information

Item Value
gene id G31454
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 3633856 ~ 3638241 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39386
CCTGATCGGTAACATACAAGACATTTAAGAGAGGCAAAAGTGACATGCTCCATAATAGAGAAgtgtaaatgtgcattttatatatatatactgcatatatacatacataaagcaataataacaaaacacagagtctgataagaatttttcttgttattccaataaaaaatacattcatacagaaatataacaattttgcaaaacaatttcaaataaaatcttGTAAAGCAAAAAAATCTTACAAAAATTTTTACAAAGAGATTCTTTAACAGGGCATTTGTGAAAGAATGAGAAGTATCAGTAATAGAAACATTTGTTGGTTAAGTTGCAGGCAAACAATTCAGCTTCATTAAGGCTCAATTACCACCTGAATGTTATTGGCTGCCTTTTCAGAGACACTGCTCTACTCCCTGTCCGAACCCTCGCTTGgtagtttgtttttgcagattaGTCCGTGTCCATGGTTTTTGTGCTACACTACACTTGTGGCCAATGACTTGTGCATGCTCTGCGATGTAAACACACACGGAATAAAAatagacattgtttttaaacaagcGAGATATTTTATTGAACTTATGCTAAAGATTAATAAAGGCATTGACAAAATGCAAGAATTTTTAACCAGTCATTCAATCAACTGTTTCTagaactaacaaaacaaaatagaaaaaaaaataaaatttttgGTCCCTTCCCCTGCAAAATTAAAGTCTTTACAAAACGTCTATAGTCAGAGTCTCTACACAAATAATATGACAGATCTCTCTTCCAAGTTTAACTAAATTAAgtatctatttgttttttattttctcacaaatTTTCTATTGGTTAGATTAAAATCACACAATCTAGATCGGTCAATAACCAACCTCTAGAGTCAGCAGTCTGAAAGAGACAGCAAGGCCTTTAGCAATTCATTAAAGAGATGCAGTGCAAGGCAGGGTCCGTCTGACAGTAGCTTGTTAATTGCAATAAATCTTCATTTTTTCTCATTCAGGGTTGCAAGCAATAGagctctgtgtttctcagttaGACATTGTCCTTTTCAGACAAATGTAGGACATTCATCCCATTTGACAAAACTAGACCCACATTTCTAAATCCAGCATTCAGACATTTGTGTTGGCTGATGAATATATacctttcaaattaaatttcctTTACACATTTTGTGCGCAATTacttatatacagtatatactacACAgtagtaaatacattaaaaagaaagtgttttaaGTGCTCAATATATTTACTCTCATTTAAGGATTAAGTCCATTTGAAAGGTGTTAACAGCTCTTAGTTAATACGTGTGATTTGTAAATGCTATACCAAATCTAAGACTATATTTATAGGATAAAGTATAAAAATTCTGTACTGGAAATGTAGGAGagctttgttttcagtttttttttttttttttttaaatccataacCAAAACGTGCAACTTCATGTGAAATGGAGCCTTAATAAAGCTTTTCAATCACCCATACCACTAAACGCGACCCCCTAGTGAGCTGTATCTCACAGGACAAGGTCACTTGCATAAGGCACCATTAAGGTCAACAGTGCATTAACAGgtagaaaagaaacaaaaaacagaaattagtCCTCAAGGCATaaataagtgaaacaaaatAGCTGCATGAGTAAATCAGTTGCTAAGCAATAGTGGTTTTTCCAaccaaaaacaaagagaaaagtatcAAGGCTTTATGTAcaatattgtaacatttaacCAATTGTATTTAGCTGCTCTTTATTGGAATCAAtttgcagtcctgattacaaaGAACAGGAAGTGTACAAACCCTAGAACCATGCAACACCGGTCTATTATAATGACGTTATAGTTGTGTTATATCTCTAAATACACAGCTTATACAATGGACTACAAATGAGCTTTGTAGCATGTCAAACAGGCTACTTAACACATTGCACATTTATTAGCTGCaccaaacaccaaaaaaaagctCCTCTCACTCAGGATCGGGTTTCCGCTTCCACTAAGGTCATCAAAGTTGAGGACAAACGCAGCCCCTCAGAAGCGCCTGGCGACAAACCCGAATCCGAACTCACTCCGGCACTCACTAACATTCAGACTCATATTCTCACAGTTCTACTCACGACcacaaggaaacaaacacaaattgttCCTCAACATCATTCAGTCAACAGCAACACTGGCTCCTCCTCCCACACAGCAGTCACCCAGTCAGACACATTCTCAGTGCTCATGCTCACTGCAGAGGCTTCTGGGAGCCATTCCGGTTAGACGCCAGCGTGTGTGTCCAGGAATCCCTCACACATCACGCACCATACACACACTTTtcccatttttttcccctcttccccCCCTCTTACGCTTTGCGGCGTCGttcatgattttgtttcaaCAACCTTCAGAACGCTTTCTCTAAAAGGTCCCGGAGGCACTGGGTATGGTGCAAAATGGCATGCTTTGGCTGGAACACACATCCCTCTTTTATGAGCTGTTCAACCTCGAAGCTGGTCAGCACACAAGTTTTCCCCTCCTTTCTTCCCGGCTGCTCAGAGGTGTCTCTTCATGTGAAGAGCCAGGTGGTCAGACCTAGAAAAAATACCTGTCACAGTGACTGCATTTAAATGGCTTTGCACCAGTGTGCTTTCTGAAGTGTCTGGTTAACTCATCGCTTCTTGCAAAGCGCCACTCGCAACCTTCCCAAGAACACCGGTACGGCTTTTACCTGTATGAGTGCGCTGATGTGCTTTTAAGTGAGAACTTTTTGTGTAAACCTTTCTGCAGCCATTGAAATGACACCTATGCACCCGTCTTCTGCCATCGGGTGAAGTCTCCCCATTTGCAGGGCTAGTCTTTTCTGTAGTCTTTCCAACACTGCCAGCACGGACCTTCCCAGGGGAGTGCAGTTCAGTTTGTATCCCGCTCCACACCTGTGGGATGATGGGCTCTTTGCTGAGCTCTGGAGAAGATGGTGGCGTGGTAATAACCGAAGAGCTCAAGTGTCCAGAATTGACCAAAACATCATTTAAAGGATTTGAGGTAAAGTTCAGAGTAGGAGAGAGCTCCTCTGAGCTGTCAGAGGCTTCACTGCTGGCATCTGAGTTCAAGCTGTTGGTCTCCAAATTTTGGTTATCCTGATTGTCCTCTTCTTTTATGCGAGCGATCTTTGGATCAGCCTCCCCCTTGTCGCCACAAGCCAAGATGAGTTTACTCCACAAATCCTCCTGGCTGTCAAATTTGATGTCTGAGGCAGAGACATAAGGTTCGCTCTGAAGATACCTTTCTAACTCCAAGCat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39386 True 3301 lncRNA 0.39 3 3633856 3638241

Neighbor

gene id symbol gene type direction distance location
AMCG00019103 fzd8,fzd8a,LOC106578536,LOC102789550 coding downstream 333770 3298338 ~ 3300086 (-)
AMCG00019102 NA coding downstream 460420 3171748 ~ 3173436 (-)
AMCG00019098 NA coding downstream 465726 3150830 ~ 3168130 (-)
AMCG00019097 NA coding downstream 539660 3077890 ~ 3094196 (-)
AMCG00019094 wnt3a coding downstream 848498 2768780 ~ 2785358 (-)
AMCG00019105 NA coding upstream 240455 3878696 ~ 4065944 (-)
AMCG00019110 NA coding upstream 537234 4175475 ~ 4176838 (-)
AMCG00019108 NA coding upstream 547499 4185740 ~ 4207481 (-)
AMCG00019112 NA coding upstream 730906 4369147 ~ 4383176 (-)
AMCG00019117 NA coding upstream 819219 4457460 ~ 4468048 (-)
G31444 NA non-coding downstream 31245 3602400 ~ 3602611 (-)
G31431 NA non-coding downstream 288616 3344857 ~ 3345240 (-)
G31399 NA non-coding downstream 422251 3211404 ~ 3211605 (-)
G31390 NA non-coding downstream 443669 3188727 ~ 3190187 (-)
G31363 jmjd4,LOC107727496,LOC107661892 non-coding downstream 536516 3096709 ~ 3097340 (-)
G31470 NA non-coding upstream 297659 3935900 ~ 3936123 (-)
G31471 NA non-coding upstream 357647 3995888 ~ 3996123 (-)
G31516 LOC106599727,LOC103368950 non-coding upstream 693930 4332171 ~ 4332577 (-)
G31517 NA non-coding upstream 697010 4335251 ~ 4335497 (-)
G31518 NA non-coding upstream 703168 4341409 ~ 4341653 (-)
G31130 NA other downstream 1455206 2177980 ~ 2178650 (-)
G31082 NA other downstream 1550585 1932341 ~ 2083271 (-)
AMCG00019059 NA other downstream 1737424 1882454 ~ 1896432 (-)
G31035 NA other downstream 1923313 1705899 ~ 1710543 (-)
AMCG00019034 NA other downstream 2310260 1321614 ~ 1323596 (-)
AMCG00019109 NA other upstream 582202 4220443 ~ 4229991 (-)
AMCG00019129 NA other upstream 1294108 4932349 ~ 4940667 (-)
AMCG00019128 gorasp1,LOC103377203 other upstream 1302818 4941059 ~ 4986384 (-)
AMCG00019165 NA other upstream 3042384 6680625 ~ 6684301 (-)
AMCG00019209 LOC106600477 other upstream 5208910 8847151 ~ 8901878 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_023249 klf6a coding NC_007135.7 CM002908.2 4141484 ~ 4148915 (-)
grasscarp (Ctenopharyngodon idella) CI01000070_02016971_02021321 KLF6, KLF6A coding CI01000070 null 2016111 ~ 2023374 (-)