G31690


Basic Information

Item Value
gene id G31690
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 5177934 ~ 5183039 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU39654
tcgtaattatattttaaaatggtaggTTCAGGTATAACCAGGagacacaaaatgaaacaaaaactggagtaatgcattttagtttgatttatttgtgtacagTAGACGGGTTTCTGACTGCTTTTATTcctattgaaaaaacaacaaaaggccTAGTTGGTGGAGACTATGTCCGTATCACAAACTGATTGCTGCTGTGATGCAGTATTAGTGATGCAATTAGTACAGGATCATCATTACAGAATTTCACTCTGAATGTTCTGAACCTCCTTAGATGCCCAGTTTCCACTTCCACCCGACATTTCTCGTCATGTTATCAGCAATATACTGTTACGGTAGTATCAGTTTGGGCTACATATTACTTTCACATAGACACTTGGAGAATTGAAACTCTGGGAAAGTTTTTGAATCCCTTGACAGTCTGCAGTCTATTCATCCATTCTGGGCAGACCGCTCAAACATCCCCTTTTTCACTTGCATGTGAAAACAGAAAATCGAATTTCCACTCTGGATTCTCTGCAGAATCCTAATCACTCTTTTCccaaagcaacacaaaaaaattgttttgtttgaacaaaGTCAAATCGCACAGGAGATGTTACAAATTGAAATCAATAACGAAcctcaaagttgttgtttttctcctgtgATGACCATTTAAagtaatgaacatttaaaaggacattattataaaatcaatcttaatcaaaataaataagacctATATACGGGGTTCTGTTAATGTGTCTTGTAAGCTGAAGCAAAGGTGAATATTAACTTGTGTCAAGAGACCAAAACCACCCGTCACACCTCAGAATTAATACAATGCCTCTTGACCTGGACAGAGCATTCAGGTAACTCAAATAAGGctgtaatgttattaaaattaagtaCTTGAGGTTCTGGTTCAAGTGTTTTCTCCTAGCAGAGCTTCGGCTGAAAACAGATACTGGAAAGGCTGCAGATACTTTAATTAAGGTGCTTGACAACAGTAAAGCACGAATTGCAATATTTCATCCTCTCTCCGTGAACGAGTCTTACAAATGGTTGTGAAGATCCGATcgatttgttttttgcaattgcTGTTTTACAAGAAACCCTTCATGACTTTAAACTTGAGACACActattaatatgtattacattaatttaggTTTGGAATAATATCACTCTGGAAACAGTTGATCTAATTGGTCTCGGCTTCAAAAGACACACAGCAGTGAGAGGCAACTGATAAGGTCATactttattgattaaaaataatgaggGAAACATGCACTGAAATCCAAAACCAAAaaccacaaaagaaaagaaaaagaaactaatAAAAACTGAGATAGTTTACAGCGTTGTGTTATAAACTACAATAAACAAAGTCATATGCCAAGGTAATCCATCGCATTGctgtttctcttttaattacAGGTGATTGATGACAattaaggagagagagaaaactaaataataaaacaaaatcaaaaatcatGCTGTTGGAGTTGCGGTTCAATCCAGAACGCACCATTCTACACTCCGTCCGAAAAGTATGTGAATGTCACGGATAAACACACAGGGGAATGGCACTAAATACATAAGGGTTTGGGTATACTTGACAAGTGTCGTGTTACCGGCCCCGCAGCAGTAATACTAATTAAATACTACACATGTTCATGCTTTTGTTGTCTGAGCCAAGCCAACATGAAAATGCCCCAgcaacaaaaaatgtgtttggaaaACTGGGTAACATTTGCGTTTAAAACGATCTATTAAACACAGTTTAAGGTGTATTTTCTGGTCGGACAATTTTGGCGAATATAATGATCGGAATATCAAAATATGATATAGTGGCATTgtcaggatttgtttttaatatatatttatatatatattggattcAAGTACTGTTTTCGGGTAAATTGCTTGGGCATCTATAGTTGAATTTTGTAAAAGAAcctattttaaagaaatttatatttaacattttcattttttttgtatttttctgctgCAAATAACTACCCTATATTTCTCACTGGGCTTTACCATGATTTCACCTTAAACATCATTAACCAATGTACAGAAGATGGCAATTAATTCCTCCCACGTGTGAATAGTGAAAATGACTCCACAAGGATAAATAACAGGGGGGAGAGTGCACAGTGTTCGCCCTGGGACGGGTTTGGAGTTTTTATTGAATCGGTGATATTTACAACATGAATCGCTAAAGCAGCACTGCATTGTACCAAACGTAGGATGCAGCTGCTAAGAAGTAGTGCAGGAATATGTTTGCAATGGCATCTTTAGTTATGTTGGCTGAACTGAATAAACAGACCAAACATGTACAATTTAGGGTAGTTTTCATTTAGAAACCGATAAAAAATCGAAGCTGTAACGCTTGAAAGGAAACGCTGAACAAATCTCTTAGACTGGGGTGAGAGGTGCTGCAGCCAGACCTCTGAGACCCGATCGACACTTTGATTTGAGCTCAATTACACACTTGTACCCCATCACATAGAGCAGAAAGTGGCTTTGACACTAGATCAAAATGTAAcaggatacaggtttgtactttgttaTTTGCAGGGAGATCAATGTTTGGATTTGGTCTAGACCCAAGTTCACTGCTATACAGATAAAGCACAGGCAGGGGTCTATAATCTCAATTGTGAGTATGGACTATTGTACCGGAGCCAAACTGAATCAAAGGGGTACAGGCAGTGTGAACAGTGACAAGATCTCAATCTGATTTTAATGAAAGTTCTCTCCTTGGCCCCTTCAATGACACTATTCTGATGATTTTGAGGGTTTATTTGCGTCTTCTGTAATGTTCAAActggtattaaaaaaatgaacacaatccAAATCATTTCCTGGTCTTATTCATCCTAAATATCATGTATAGATACTCGATGGCActgcaaaaacattttgcactCGTGCTCAGCGTGAGAATCCGATGCTGAAAGTGTTCATGCAACATAGTTacattatgcatgtatttaagaTGAAATAAGCTTGCTTTTAAAccctcatttaaaaaaaagaacaaacccTCGGTGACAGAAAGGACAGCAATTTCTAGTGAGCGACACctgctgtggaagaaaaacaaaaacgctaCAACATAAAAAGGGTTTTGTTATGTTCCTGTTTCCTTACACagcactgattttttttttcttcctaagATACAAAGGCCAACTGTGAAAACAcccaatataataataataataataaaaaaaaaaaatcaacaccaaactttattatttacatactaTAGTAAAGTTATTAAATCAAGTATATGCAGTTTTTAATCCTCGTTCGCTAATATGCactactttcattttttttttgttttcgaaAAATTATTCCAAATCAAAGTCACTGCTAACACCCACATACAAACTAATGCATGAATGATCGCTCATGTGGCTCCAGTTACACGATTAAACTTCATTAAGTGTAATTAACAGAATTCACAAATTCACAGATGTAGAAAGTAGTAATAATCAGAAATGAGAGCACACTGTATAAAGCTGATGTGAGTGTGGAACGATTCAAAGTGTactttctggaaaaaaaacatgtcaataaATGGTTATATATGATGTTATTACACAAACCACAAGCTTTTCTGAAATTATCTTCACTCGTGAGTTTGTGAAACGGACCAAGAAACAGCCGATTAAAGGAACAGTCGTAGTGCGCTGAAAGTCGGAAGTGAGTCAGTTTGTACCTGTTGATATTGAAAAAGTGTAGGAGTGTAAAATGACCTGGAAGCTCCTCACTCGGTTCTGAATTCGGTGATGAAACAATCGTGTTTTTCGGTGCCAGTGCATTAAGGAGTGTCTCGCCAGTGTTGGGGCAGGACAGGACAGGTGATCGCACACAAACTGTACCTGTACTGCtctacagtaaaataataagcCAGGACCTCGGGGAACAGTCAGTGCGGCGCCATGTCTTTATCCTCAGAGTCCTTACACTGACTGAGGACAGGAGACAGCGGGCCAGCGACAACAGTGGGCGCCCAAATCAAAGCGCACTTACGGGAAAGGCCCGTGAGGTCTTAAAGAAAGGCAGCCTCGCGTTGTCTAGGTGGTTATAGAGGTGAGATGTGAAGGACTGTGAGACGTATCCCCAAATACCTGTATCCCAAAAGCCATTTAGAAAGAAAAGTGAATTAACTGCATTTAATCCCAGCACCCCCCATTCCCAACGGGGAAGCCCTCGGACACGCACTCACGGCAAATGCGTTCAGAGGAGattatgaagaagaaaacagtTCGATACTGAAAAGGCTGATTTGTGTGTCTAGTCTAACATTGTGGCACAAGTACATTGCCAACCGAAATTCGGTCAGAGAGGCATGAAGCACAGTAACTCAGTTAGACGTCACACCGGCGCTCATCACAATAACATTGGTGTTACTTACTGGTGCCTTGTTATTTAAATATCGTTCGTTAATGGAAAGATTTAAGTTAGATCGACGGTAGGACTTTCAAATTAGGTCTAACTAAAGCTGTCCCAAGTCCCCAAGGTGTGCATCTAAAGGAAAGTTTAATATTAGTAACTGAAACCACATTCAATCTACAATTAAAAGTCATGACTATAGTGGGGACAACCCCCCATTTATTCAGTAGTACTGTTTAAGATAAGGCATTGTTACATTACCAGGACTTGCAGGATTAACGTCGAATTGTGCAAATGCAGGTTTTaaattagaagaagaaaagaaagaaaaagaaataatcGCACGGGTGGATGTTGATGATTGCTTCATTccaaacatacatacactgtaAACGTTTTAGTGTGATTCCTATAGGCTGCATTTTAAACGCACGGTCCTAGTTACAAAGCGATGTTCGAGTCCTATGGGGTGACGGCATCTTATTTGTCTTTGGCAGTAGTGGTTTCATTAGGCCAATGAAAGTAGAGAATACGCACAAGTGTGCACTTCGgtttgtttctcttgtttaGGCAAGTCAGGTCCCTGGTGGTTCGTACTACAGTTTAACTAATGCTGAGCTGTGCAAATCCCATAAGTTTAACATCGTCTGGAATTTCAGAGCCTTCGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU39654 True 5077 lncRNA 0.38 2 5177934 5183039

Neighbor

gene id symbol gene type direction distance location
AMCG00019132 NA coding upstream 25917 5147715 ~ 5152017 (+)
AMCG00019133 LOC103360316 coding upstream 35608 5140560 ~ 5142326 (+)
AMCG00019131 NA coding upstream 38726 5125606 ~ 5139208 (+)
AMCG00019127 NA coding upstream 200044 4968121 ~ 4977890 (+)
AMCG00019126 NA coding upstream 214701 4950027 ~ 4963233 (+)
AMCG00019141 NA coding downstream 98259 5281298 ~ 5305514 (+)
AMCG00019140 NA coding downstream 123374 5306413 ~ 5318056 (+)
AMCG00019139 acaa1,LOC102793903 coding downstream 137234 5320273 ~ 5325949 (+)
AMCG00019143 NA coding downstream 183427 5366466 ~ 5390362 (+)
AMCG00019146 gars,LOC102797257,LOC107591252,LOC103132552 coding downstream 350641 5533680 ~ 5542935 (+)
G31663 NA non-coding upstream 50305 5093881 ~ 5127629 (+)
G31622 NA non-coding upstream 147839 4972972 ~ 5030095 (+)
G31566 NA non-coding upstream 430185 4747548 ~ 4747749 (+)
G31461 NA non-coding upstream 1313330 3864189 ~ 3864604 (+)
G31432 NA non-coding upstream 1789249 3353340 ~ 3388685 (+)
G31799 NA non-coding downstream 389733 5572772 ~ 5577699 (+)
G31820 NA non-coding downstream 566778 5749817 ~ 5750063 (+)
G31867 NA non-coding downstream 981692 6164731 ~ 6167316 (+)
G31872 NA non-coding downstream 1004353 6187392 ~ 6187723 (+)
G31873 NA non-coding downstream 1005396 6188435 ~ 6188700 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 809731 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 1967044 3190612 ~ 3210890 (+)
AMCG00019096 LOC107727496 other upstream 2077763 3094452 ~ 3100171 (+)
AMCG00019089 NA other upstream 2559882 2520104 ~ 2618052 (+)
G31110 NA other upstream 3030371 2141830 ~ 2147563 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other downstream 747665 5930704 ~ 5939597 (+)
G32005 NA other downstream 2237462 7420501 ~ 7421083 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other downstream 3162416 8345455 ~ 8384592 (+)
G32286 NA other downstream 4078335 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other downstream 4146440 9329479 ~ 9348819 (+)

Expression


Co-expression Network