G32076 (cul2)


Basic Information

Item Value
gene id G32076
gene name cul2
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 7755253 ~ 7758227 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40129
GGAATGAACTCACCTTTTCAGAGTCGTGGTTTATCATTTTGACATCCAGCAGCGACTTGATTGTTTTCATGAGCTCCTTCTCGTTCATCTGTGTGCTGTCCTGGAGCTCTTTGTAACTGACCGTCTCGCCGTTATTGAAGGCCAGAAGCACTGCCATCTGGTATGTGGTGACCATTGCCACGTAGGGCTTGGAGAGATAGTTCATTTTCACTTCACCTGTAGTGCAGCCAGGTTAACTTCCTCCCACTGAAGTGCTgattgtaaaataattcaaactgcaaaggaaaaataatcaatattacaCCCATTTGCTTTCTCTAGCCTCTCTCTGCGGTCCAGTGGAAATCCATTACGCCTCACTGCAGAGAGTGACATCGCATTCCAGCACTGAAGTCAGTTAGAGGAGAGGAGCTCGGAGGGGCTGACCCCATCtgtgacacacagagactgTGATATGGCACTTCTGTCCCCAGACATCAGGCAGGGAATGCTGGGAGAGgctgctttgcattttaaatatagtggCCCCTACTTATAGATGTCAGGGGAGGCCGGGGGGGGGAACCACCTGCTTAAACTCTATTTCAACACTCAGTAACTTG

Function

symbol description
cul2 Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-protein transferase activity. Acts upstream of or within chordate embryonic development and vasculature development. Predicted to be part of Cul2-RING ubiquitin ligase complex and SCF ubiquitin ligase complex. Orthologous to human CUL2 (cullin 2).

NR:

description
PREDICTED: cullin-2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40129 True 602 lncRNA 0.48 2 7755253 7758227

Neighbor

gene id symbol gene type direction distance location
AMCG00019186 NA coding downstream 147878 7599869 ~ 7607375 (-)
AMCG00019184 agap3,LOC107383869,LOC102197517 coding downstream 255710 7480093 ~ 7499543 (-)
AMCG00019185 NA coding downstream 284990 7445886 ~ 7470263 (-)
AMCG00019182 agap3 coding downstream 321615 7431674 ~ 7433638 (-)
AMCG00019183 agap3,LOC107690985,LOC107555304,LOC101174700 coding downstream 332931 7420743 ~ 7422322 (-)
AMCG00019204 NA coding upstream 868787 8627014 ~ 8636548 (-)
AMCG00019203 NA coding upstream 878323 8636550 ~ 8662947 (-)
AMCG00019207 NA coding upstream 1210659 8968886 ~ 8984696 (-)
AMCG00019208 NA coding upstream 1275564 9033791 ~ 9044972 (-)
AMCG00019210 bambi,LOC106578551,LOC106590018 coding upstream 1451113 9209340 ~ 9214704 (-)
G32061 NA non-coding downstream 52177 7702842 ~ 7703076 (-)
G32057 NA non-coding downstream 68084 7673755 ~ 7687169 (-)
G32037 NA non-coding downstream 335400 7416085 ~ 7419853 (-)
G31997 NA non-coding downstream 464123 7290851 ~ 7291130 (-)
G31993 NA non-coding downstream 530256 7224589 ~ 7224997 (-)
G32096 NA non-coding upstream 212966 7971193 ~ 7972225 (-)
G32144 NA non-coding upstream 579809 8338036 ~ 8375404 (-)
G32351 NA non-coding upstream 1591622 9349849 ~ 9352652 (-)
G32586 NA non-coding upstream 3209902 10968129 ~ 10968403 (-)
G32587 NA non-coding upstream 3210290 10968517 ~ 10968773 (-)
AMCG00019165 NA other downstream 1070952 6680625 ~ 6684301 (-)
AMCG00019128 gorasp1,LOC103377203 other downstream 2768869 4941059 ~ 4986384 (-)
AMCG00019129 NA other downstream 2814586 4932349 ~ 4940667 (-)
AMCG00019109 NA other downstream 3525262 4220443 ~ 4229991 (-)
G31130 NA other downstream 5576603 2177980 ~ 2178650 (-)
AMCG00019209 LOC106600477 other upstream 1088924 8847151 ~ 8901878 (-)
AMCG00019213 NA other upstream 1492925 9251152 ~ 9434114 (-)
AMCG00019272 ppp4r1,LOC106579644,LOC106590337 other upstream 4093881 11852108 ~ 11885571 (-)
AMCG00019284 NA other upstream 4654927 12413154 ~ 12423320 (-)
AMCG00019312 NA other upstream 5410209 13168436 ~ 13188292 (-)

Expression


Co-expression Network