G32286


Basic Information

Item Value
gene id G32286
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 9261374 ~ 9539211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40426
GGGGGATTAAGGCTCCCACTTCCGCCAGGCTGTTCCATTGATTGAGGGACGGACGGGCGTCTGGCTGGGAAGGATCACGCTCGGAAAACAAGGATGCGGTCGAGTTAGGGTAGAGATTCGGGAAGAGGAAGATCTGAAATCATTTGTACgaagaaaaggaaatacacaaaaccaaacagaCCTGCCAGCACTTTGGATATAGAAGCCACGACTCGCCAGAACCTGCAGAAAGAGAAGCAAAGCGACCGACTTTGACCGGACTCGTGTATTATTTGcgctacaaaaataaacacggAACATCGTGTATCCCGAGAGCATGAGGGCCTTGTCTGGGAGCTGATCGTGATGTTTGGAAGACTTGTTGAAAGAGGGAGAGTTACAGGTTTGAACAGGGAGCGTCTGCCAATGGCATAAATCTTCCTGAAGACAACTTGGCCGAGTGTGGTTGAACCGAATCTGATCCCTGCGTTCTGGCTATAGAGTGTTACTCTGACATTCCTGTGTGATATTCCACAGGCAGGAACCATGCCGGCGCTATCAACAGGACCTGGAAATGACACAGGTCTGTATGAATTCTTGGCTGCCCTACCTACCCAGCTCCAGCCGCATGTAGACAGTCAGGAAGACCGGACCTTCCTCCAGGATTTGTTTGGTGACAAAAGTCTGCATTCACTGGTGAAGATTCATGAGAAAATGCAGTACTAAGAGCAGCAGTGTCCGGTACCGGTCCTGCCAAGTGCCGGGATCTTGGCTAATGATCTGGCTGAGGAGCTGCAGAGCAAGCCAATGAACAGCGAGATCCGAGAGCTGCTGAAGCTGCTGTCGAAACCTCATGTCAAGAGTTTACTTTCTGTCcatgacacagtgacacagaaaaGTTATGATCGAGAGCTGCCACCACTgcctgatgatgatgaagactCATCCGACTGGTGAAAAACAAGGTGCCACTGGGGGCAACGATAAAAAGGGACAGACAGGAGCTGTTATTGTAGCCAGAATAATGAGAGGAGGAGCTGCTGATATAAGTGgtCTAATCCATGTGGGAGATGAGCTGAGGGAATTGAATGGGATTCCTGTTGAAGACAAAAAGCCAGAGgaaatcattcatattttgGCCCAGTCCCAAGGggcattaacatttaaaataataccagGCATCAAAGAGGAAACGACAACCAAGGAGCCTAAGATGTTTGTCAAATCCTTTTTTGACTATGATCCTAATGAGGACAAANNN
>TU40428
GGGGGATTAAGGCTCCCACTTCCGCCAGGCTGTTCCATTGATTGAGGGACGGACGGGCGTCTGGCTGGGAAGGATCACGCTCGGAAAACAAGGATGCGGTCGAGTTAGGGTAGAGATTCGGGAAGAGGAAGATCTGAAATCATTTGTACgaagaaaaggaaatacacaaaaccaaacagaCCTGCCAGCACTTTGGATATAGAAGCCACGACTCGCCAGAACCTGCAGAAAGAGAAGCAAAGCGACCGACTTTGACCGGACTCGTGTATTATTTGcgctacaaaaataaacacggAACATCGTGTATCCCGAGAGCATGAGGGCCTTGTCTGGGAGCTGATCGTGATGTTTGGAAGACTTGTTGAAAGAGGGAGAGTTACAGGTTTGAACAGGGAGCGTCTGCCAATGGCATAAATCTTCCTGAAGACAACTTGGCCGAGTGTGGTTGAACCGAATCTGATCCCTGCGTTCTGGCTATAGAGTGTTACTCTGACATTCCTGTGTGATATTCCACAGGCAGGAACCATGCCGGCGCTATCAACAGGACCTGGAAATGACACAGGTACAGTGAACTCTCGAGCCCCATGGCTTTGGTGTTGTTGGTACGAATGGAAGCTTTCAAGGAACGCTGTTGTATTTACACTGAACCCGAGTGAGCG

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0055004 atrial cardiac myofibril assembly biological_process
GO:0055014 atrial cardiac muscle cell development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko04261 Adrenergic signaling in cardiomyocytes
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU40426 True 1240 TUCP 0.48 11 9261374 9539211
TU40428 False 659 lncRNA 0.50 3 9261374 9471843

Neighbor

gene id symbol gene type direction distance location
AMCG00019206 NA coding upstream 205518 9046918 ~ 9055856 (+)
AMCG00019205 NA coding upstream 476435 8781781 ~ 8784939 (+)
AMCG00019202 arhgap12,LOC102789345 coding upstream 655254 8577925 ~ 8606120 (+)
AMCG00019200 NA coding upstream 720069 8540613 ~ 8541305 (+)
AMCG00019201 LOC101470268,LOC102291500,LOC102212547,LOC103361717 coding upstream 739520 8497875 ~ 8521854 (+)
AMCG00019217 armc4 coding downstream 87199 9626410 ~ 9628658 (+)
AMCG00019218 armc4 coding downstream 115115 9654326 ~ 9663886 (+)
AMCG00019219 mkx,LOC107665863,LOC103377095,LOC106578547 coding downstream 138449 9677660 ~ 9714621 (+)
AMCG00019227 NA coding downstream 192979 9732190 ~ 9745637 (+)
AMCG00019222 NA coding downstream 249150 9788361 ~ 9792594 (+)
G32268 NA non-coding upstream 38865 9163643 ~ 9222509 (+)
G32235 NA non-coding upstream 327628 8895239 ~ 8933746 (+)
G32113 NA non-coding upstream 1089513 8171645 ~ 8171861 (+)
G32048 NA non-coding upstream 1640562 7620504 ~ 7620812 (+)
G32010 agap3,LOC107383869 non-coding upstream 1829430 7431680 ~ 7431944 (+)
G32321 LOC103376870 non-coding downstream 154058 9693269 ~ 9750270 (+)
G32324 NA non-coding downstream 178811 9718022 ~ 9718564 (+)
G32325 NA non-coding downstream 179828 9719039 ~ 9726753 (+)
G32418 NA non-coding downstream 270673 9809884 ~ 9812637 (+)
G32437 apbb1ip non-coding downstream 378109 9917320 ~ 9920036 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 876782 8345455 ~ 8384592 (+)
G32005 NA other upstream 1840291 7420501 ~ 7421083 (+)
AMCG00019154 ghrhrb,LOC107704523,LOC106560417,LOC107717144,LOC107556991 other upstream 3321777 5930704 ~ 5939597 (+)
AMCG00019111 phlpp1,LOC106599727,LOC103135813,LOC101477421,LOC106925929,LOC102225687,LOC103479552 other upstream 4893171 4319596 ~ 4368203 (+)
AMCG00019100 crem,crema,LOC105019435,LOC106578540,LOC108428923,LOC103396770 other upstream 6050484 3190612 ~ 3210890 (+)
G32539 NA other downstream 865428 10404639 ~ 10409497 (+)
G33159 LOC103376870 other downstream 4900042 14439253 ~ 14486706 (+)
G33283 NA other downstream 5625137 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 6015608 15554819 ~ 15626955 (+)
G33406 NA other downstream 6504731 16043942 ~ 16081943 (+)

Expression


Co-expression Network