G32539


Basic Information

Item Value
gene id G32539
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 10404639 ~ 10409497 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40734
gcaagCATGCAGccctttctttatttgtttaataccTTCACAGCTCTGTCTTTGCCATAGCACTGTATTATACATCATGGTTTAAAGctttacaaaatgaaagaaaacaaaatatttacaaaatctaTCTGTGCAAACATTACTCTTTTACATTAGCATCAAACGACTCATCTAAAATATCTGAAAGGCATGCATAGAAATAAACTTTGGTATGTTAACAAAACTATGCAAGGTTtcccaagagagagagaagcatgtATATACACAGGATTGCTAGTATTTAAATCACTATcagtatacatttaaacatcaataaccATTAACTTGAGAAGCACAGATCTCAGTAAAGCTTGATAGTGTTAAGGTAAAGGTTTGGGTATTACCCCCAGCTTTAAACTTAAAATCCCAACACAGTGTTTTTATCAATATATATGCATTGTCTGGTAATGAAGTACAAATAACTTTGGCAAATAGGCATAATAACTACTAAAACCAGAAGAGTTCAATATCATCAAACCAGGTATTACAtacactattttaaataaattggcAGTGCATGGGAAGCTAATAAGATCAAACAAAATATCccattcttaattaaaatagtaatttgtcatgttttattagTTGAACTATAAAGCTAACAACGAGTAAGTAAGTGCTGGCGACTTAAAactaaattcaaaatatacttGCGTCAACCagcttttattctttttgtaaAATTAGATCTTTTCACTCTAGATACATGCCAGGCCCTGTATCCTTTCACCCCCTTTCAAACCATTAGTAAAAATATACTTTCAACACCACTGTGCAGAAAACACACCCGTCCCCTAAAAACCTTGCTTATTCACAACCCATTCACTTTAACACCGTAAGTAAAACCAAATGGCAGCGGTTTCTCTGGTGCCGTTTCTTCCATATTTCTATGAATTTACTGAGATCTGCAAATCTGTCTTAAAACAtcggattaaaacaaaataaaaagcgtATTGGTGTATGAATGAAATGGCAGCCAGTTAAAATAATAGTgctatacattaaaaacaacaaatccgCAAAGCACAGGTGCCCCATCAACCTGCTAGTGTGTTTAAGTTTTTCTTCCCTTGCATCACAAAAGATTATGCCGTATCCTTGGCAGATGAAGCAGGTGGCTGTGTGGCTTTGCTGCTGTTCCCGTTCTGTGGCTTGTAGCTGATGAAGCTGGGTGTGTGTATTGTCCGGATGCTCTTCGCACCGTGACTCAGGGAGACGGGGGATAttggagaagaggaggagggggaataggaggaggaagggggtggTCGGCCATTTTGAGTCTGCGGTGAGAACGAAAGATTTTGACCTTTACCGGTGTGAGTGGGGCTTGGGAGTCTGAGAGAGCCGTTAGACAGGGAGGGGATGTGGGAGGACGTGGCGGGGTGGTGGGGAGCGGGGCGGCCggtgtgggggggcaggaggCTGGGAGAAGGGATGGAAGACTTGGAAGAAGAGGAATTAATAGGGTTAGTAGCGTCTGAGCTAGAAGCAGACAGAGTGCTGCTTTTCCCAGAACTAGGAGAAAAGGCTGGGATCTTAGAAGCAGGTAAAGTAGGGGAAGTAGCTTTATTATCCCCACCAGCTTTCTTAGCACTTCCGTTAGCCTGCAAACAAAGATGCCGGGAGATATGGTTTgtcaaaaaaggaaattaaaaaaaaaaaaaaaaagagccagacaacattttaaatcacttaaGGGCTACAAGAAGAGTCCTtcagagtttaaaaaataaataaaaacacaaaagatacAAGTGTTACAAACTAAATCCACGATCTTCTCTAGGTTTTGTCAGATCTAAGAATAACACGActaaagaagaaggaaaagaacaTTATAAAGGAGGGAGGGGACAAGGGGAGAGTGTCCAGCATGGTGGCCCCTGTGTTAGGATACATGCCTGTCATGCTTTGTTGGAAGGCAACACTGCAGACATGCACAAGCGTGTGGTGAAGGTGTTACAGATAACAGTCAGAAGTCTGGAAACATGCCATCCAAGCAGATGAAAACAGACATCAACAGATCCAGGTTGGTCTACTCGATTACacttaagaaaacatttcaatactCGGAGCTTTGGTTGTCGTTGTTGCAAATTGCTCTGTACTTTGCTACGATtgtttctccttctctcacAATACAAATGAACGTCCTTTCAATGTCTCTATAGTAAAACTACCTGTCGGAACTGCCTCTGAGGGTCCTGCagtttttgtggttttcctgCCTTGTCTGTACCTCCTGGTTGCTGTCTGGTTTTCGCAGACAAAGGCACTGGCATCCGACTGGTTGATGTAGTAACACTGGTGCTCTGCAAGGATTCGGataaaaacgaaacaaaaacaaaagcggAAAACCACATTGGAGGCAGCGTGTAAGATTAGGCAAAACAAAGAGAGCCAAATCACTTCAAAGAATCGGTTCACATTCATGATTGTCAACAATTAGAAATCACAAAACGACAGACTGCATGCACCGACACCCCCACGAGAAAACCAACATGCGCAGAATGAAGGAGAATCAAAGAACCACAATTTAATGCATCAAGTCCTTCACTGCCTGAACCCAGGGTTAGAGTTTTAGcagcaaaatcaaaatgtagaCACCCCTTTAAATGCCAGTTCACGATTATGTCAACCGTAATCACACAGAAGGTTAAAGCAGAAGTCTCCCAGCACCTGCGAATGTATTAATACTCTGTAGAATCAGCTgttaggggggaaaaaacacacaaataataataaataaaaaaaaaaagaaccaaaagAAACCAAGCCACCTGCGCGAAGCGAGAAGAGCTAAAAAGAGACCTGTTCGCTGGGGCTGGAGGGCACGGCGGCAGGCCTGGGCAGAAGCTGTGGTTTTGGCTTCTTGCGGTGAGCAGGTTTATGGGAATGATAGACGGGGGCGGCTGGCTCTGACATGGAGTCGAGCTCATGCGCACTGCGTTTGTCTACAGATCCAGCCCCCTGAAGAGAGTAGGCTTTCGATTCCTCGTGAGCCGCGTCGTCAGGGGATCGGGGGCCCATTTCACTTATCGTTGTTTCTAGCTGCTTGATGGTTTGTTCTAGGCTGTCTAGGGTCTTGTATGTGTTCTTGCGAATCTCATCAGTCCTGTACTGGGAGTCAGATGAACTCTGCTGACCTGATGTCACGGTctttgtgctgctgctgctgctgctgctgctggttgTAATGGTGGTGACCGAGTCAGCTTTGGACTTTGACCGGTTGATTTCAAACCTCTTAGCTTCCTTCTGCTGCTTAACAGTCCCATCGGGCTCTTCTTCCTCCTCGTACACCACTACCTGCAGCGTTTTCTTGCCCGTCTTCGTGCCGGTGCGGATGGCCTGAGTGAGCGCTGCCAGTTGTTTCTTAGGgaacttgaatttgaattttttcTTGCCGTCTTGCTTGCCGTCATTCACAGACTCTGTCTGTTCTGCCATCAGTCCCGGGGATGGTTCCTCCAGCCTGCTGTCCTCCTGTGTCACAGCGCCAGAAGAGTAAGCGAAACTCTGGGCATTGGATACGTACCCTGTGTTATCTGCTTCATTTACTCCAGCTTCCACAGAGAGATCTTTCCTCTCTATATCTGCCTCCTCAGCTTCTTCATTCTCCTCCTCGATCCGCTCCTCGGCCAGCATTCTCTCCAGCTCTTCCTCACACTCAAATATAGTGGACAGTCTCTTGTAGGCAGAGCGGATGTCCATGGGCTCGTCGAATATGATGATCACTGGCTTCTTATCAAAGTTGTTATCTTGGGTGGTCATTTCCCGGTTATCTTCGACTTTGACGGTCTGAACATTTTCTCCTTTGCTGTTGACTATTTCCTCATATTCTCCACAAGACAGAGCTTGCACTTTTGTGTCAGTGATCATGAAGGCGATGTTATCAGTGGGCGAAGGaccttcttcacacagagagctaCAGTTGGTGTCTGCCTCTTCAACGACTCGACCTTGAGAAGATCTCATCACAATCTGCTGACTGTATCCGCTCTCTGCGCCTTCGTGAGATGATTCGACAGTGGGAGAAGCATCTTGAATAATCACTGTAGAAGTAACCAATAGCCCTCCTGCCACCACCATTGCTCCATTATGAGGCACACCTTCCTGGAAGCATAAGGTCACTGCCTGTTCATCAGCACTGAGTTGATGAGACATCGTTACAGCTACCTGCTCCTTCTGAACTGGGATACCCATCGGCTGAATATCTACAGCTTCTGTGGTCACTTCAGGATCTTCCTGATGATATTCAGTGTACACTATCTGCATCTGAGGGGAAGTGTGGGGGTCATTCTCTTGGCTTTCCAAAACTGAGAGAACAGGCAACTCATTTGTCACAAACTGCTGAAGACTTTCTGAAATTTCATAAGCATTCACATTGGCAACCTGTGAAGAGGAAACGGTTGTTTCAGTGTGGGTTTCCCTGCGCTCCCGTTGGTCTTCCATGTCTGCCGAGGCGTGCTCTTTGGAAATCTGTGCAGTGACGTAATATATGACCTAGAAGAATAAGAGCAATATATTAGAAATAGGaattacttgtttatttgttttccaaaaaataaagccCAAAACtatagagcaggggttcccaaagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40734 True 4649 TUCP 0.44 2 10404639 10409497

Neighbor

gene id symbol gene type direction distance location
AMCG00019242 arhgap21 coding upstream 1148 10331115 ~ 10403491 (+)
AMCG00019238 NA coding upstream 99815 10282989 ~ 10304824 (+)
AMCG00019235 NA coding upstream 125531 10270619 ~ 10279108 (+)
AMCG00019234 NA coding upstream 457593 9939826 ~ 9947046 (+)
AMCG00019236 NA coding upstream 498906 9893861 ~ 9905733 (+)
AMCG00019245 NA coding downstream 239082 10648579 ~ 10658798 (+)
AMCG00019248 NA coding downstream 291779 10701276 ~ 10709432 (+)
AMCG00019254 NA coding downstream 668474 11077971 ~ 11087695 (+)
AMCG00019255 NA coding downstream 858511 11268008 ~ 11280932 (+)
AMCG00019259 NA coding downstream 943722 11353219 ~ 11354106 (+)
G32490 NA non-coding upstream 295489 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 484603 9917320 ~ 9920036 (+)
G32418 NA non-coding upstream 592002 9809884 ~ 9812637 (+)
G32321 LOC103376870 non-coding upstream 654369 9693269 ~ 9750270 (+)
G32325 NA non-coding upstream 677886 9719039 ~ 9726753 (+)
G32549 LOC103376870 non-coding downstream 53666 10463163 ~ 10508063 (+)
G32671 NA non-coding downstream 968459 11377956 ~ 11448251 (+)
G32674 NA non-coding downstream 1222861 11632358 ~ 11637880 (+)
G32778 NA non-coding downstream 1591466 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 2199904 12609401 ~ 12612533 (+)
G32293 armc4 other upstream 775977 9369898 ~ 9628662 (+)
G32286 NA other upstream 865428 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 1055820 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 2020047 8345455 ~ 8384592 (+)
G32005 NA other upstream 2983556 7420501 ~ 7421083 (+)
G33159 LOC103376870 other downstream 4029756 14439253 ~ 14486706 (+)
G33283 NA other downstream 4754851 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 5145322 15554819 ~ 15626955 (+)
G33406 NA other downstream 5634445 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 7039823 17449320 ~ 17452659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location