G32671


Basic Information

Item Value
gene id G32671
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 11377956 ~ 11448251 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU40925
CGTCACGccgctctcctggcagtcagtAAGTCAGTGCGGGAGTGGAGCAGCTAGAGAGGCACAAGTAAGTAGTTAAGAGGGAAAGGCAGGGACTGGACGCTTTAGGTACCCGGAGAGTAACTGTAAAAAAGAGGAACAGTTTCAGTTCTGAGCAAGAGGAAGAGTTACATCCATCTTACCCCGGGAGCTGGGGGGGAACATCTGTTACACTCCCGCAATGGAGAGAGTTATAACTTGCTTCTTTGCGGCGGTCAGTCTTTTGGGCTTAGTTAGAGGACAAGCATTTAAAGGTGACTGTAACTTTGAGAACTCGTATGTTACCTGTGGATATAGCCAAGCTAAAGATGACGACCTTGATTGGGAGCAAGTCAACACCAAGGAGAAGCCTTCCTCGGATCCATGGATACCATCAGcaTTGACCCTCCGGTTTCTAAGGAAGCAGATGGTACTTCCTTAGCCCACTGGCAGATGGATGCTTACAATCAGCGGAAGCCATTAactatgaaacaaaacaagagacGGGCTGATAATACACCTGGACTAAAACAATTGTGTTGCCATAAAATGAAAGTCTGGCTAACATGACAATGTTAAGTTATGACAATTATGCTTTTGTGTTCTCCGTGATAAGCTATTTGTATACAAAACTGGAAAGTAACCGCAATACCATATTCTTTGAgaactgcatttaatttgcacAGTGGTTTTGGCTATGgcttcattttctgtttcccATCTCTTCTCAGTGGAATGAGTGCAACATAAAGGGAATGTCAATTATTTTGGATTAAGATGTGAAATTTCAaaactttattataaaaatattagtttCATATTCTTACCTCAAGCTATGGAGTGCATTGGGGGTGTTTGCATATTGGACATCTTATATACTGATCTCTACGTAGTCACCTACAAAATATCCACcctaaaacaatacattaaatacaataatagatttatatttattgctaTTACCTGGGGGAATTTTTCCTTTATGAAGCATAATTGACttataaatcaaatgtttattgCTTTAATCATTCATTTGGATTACTTCTGGAAAGTACAGTACTGTTGTTGCATCACTTCCACCCACACCCAGTAGAGTCGCACTACTGGAGGAAATGATCAGAGGGTGGATTCAGAGCATTTGTTTCCTCTATTTAGTACATTGCTGTGTATTTCACTAGACAAGTTCTGACTGAATGTGTTGAGACCCATGTAAACTTTTTATACCCGTTATAATGAGATCTCCACAAATTTAATGTGTAAACAAAATTAGAATCAACAAATTTGGAGAAACTGTGTagaatttacatatttttcaacCGTATGAATGACCTCAGAATACAGACAAAAGGAGAAACATTTTCTAGTCACATGGTGCAAGAAATGTATACCGTTTCTCAGGTAGACGTTGAAGTACTGCCACATGCCTTGGAATGTGTTAACACTGCAGTTACAGAACACATCTTgcttacacactcacactaaatacatttgattgagAGAAGAGCAAGGCTTTCTTTTCAAAGATATCTCCCTGCAGATAGCGAAATTATTGTTTTCagccttatttaaaaaaaataataaaaaaaaatacataacttcTGGAGTGCATTCAAAATGAGCTCAAAATGAAGCACttcatattaacaaaataacCCTCACCGCTAGATGAGTTACTGGTAGCACAGAGTAATAACAGTCTGTCTTCATTGACATTTTCAAGGCATTTCCTTGCTTTCCTCTGTGTGACCTCTGTGAATTGTATTACTGAAATAGACTGAGAGGTAAATGCTGAATGAAAGAGAGGGTATTGGTTTAAAGAGTGGCCTCGTGGTCCTTCACGCTGATTTCTATTGCAATAATGATTCCAAAGTTCAAGACCTGAGCAGGATAGAAATAATGAGTAGCATAGTCATTACTGCAAATTACATCTACCATTTAAGACCCTTATTAAACTCAAACCCGTGGACAGTGATTAGTCTGGAACTTTGGTACATGTTCCTTTTATCTGAACTAGATTATAACTTTTAATATCAATGATTTACCTTTCACACACAATGTTTCAGAATTGCAAAATGATAGATTAGGGAATCTAATTAGGGAAAAAGTTTCAaggtaaagtgtttttttttaactaatacTTCTAGGGCTTAGAATAAAGCAGGAAGCATCAGAAGCATTGCTCttcactttaaatatttgtgaaatacacaataaaattgATCCTGCAGTGTAATCTGACCGTTAGCTggagcaaaaaaaagaaaccttgcTTAACAAATGGTAATAGTCAACTTCATACCAATGTTAACATAACGGAAAGACAGAGCTCGCTGCTCCTAAAGCCTGTTTTCTCCCTTGCACTGATCTCCATGACATATACTAATTTTCTGGCATAATCTGTAGGAGTGTGTACAGTATGCTGTTTCAGGTTTTGTATGCATCTGTAAGTGTTTGGCTCTTGTTTGCCAATGACAGGCTGCAGATTTCCTTTTAACCCCCGCATATTCTGAAGAAGTTAGTTAGATCAAacacatacttttttttaaacaaatatatattgtaaatctGTCAAACAAActgttcaatgtattttttattttttatttttttatttttctaatttcataGCATTCGGTCACAAAATGGATGGTTATTGTCttgtaaaacaaactgaagatCGCACTAAACTGGCAGCTCATAACCAATCAACACTGACCTTACTATATCTGTTATGTACAGAGGTTACTCTAAAAGTTTAGATATTATCTGGGAACCATTTGTGATTTGCATAACTTATGCcggtttaattaattcatatctTAAACCTCATGTTCAGTTTCTCGTAATTAGCAATGGATCCATAATCTATTGATTTTTGCAGTTATGGTTGAGTGAGTTTAGACTTAGATACtccttacattaaaatacatttcctgtagTAGAAACAAACCCAAAATGTCTAAGGACAATGATTTTATTCTAGACGTGGCTCTCCGATGGGAACTTCCCACTTTGACTTGGCCCTATCCCTGCCCTTGTAAGAATTCCCTGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU40925 True 3069 lncRNA 0.37 3 11377956 11448251

Neighbor

gene id symbol gene type direction distance location
AMCG00019259 NA coding upstream 23850 11353219 ~ 11354106 (+)
AMCG00019255 NA coding upstream 97024 11268008 ~ 11280932 (+)
AMCG00019254 NA coding upstream 290261 11077971 ~ 11087695 (+)
AMCG00019248 NA coding upstream 668524 10701276 ~ 10709432 (+)
AMCG00019245 NA coding upstream 719158 10648579 ~ 10658798 (+)
AMCG00019261 NA coding downstream 23871 11472122 ~ 11477288 (+)
AMCG00019262 LOC106929367 coding downstream 76948 11525199 ~ 11535371 (+)
AMCG00019264 LOC108432749,LOC108271270,LOC106579657,LOC106590348 coding downstream 105969 11554220 ~ 11567397 (+)
AMCG00019263 LOC108432749 coding downstream 137542 11585793 ~ 11599813 (+)
AMCG00019265 NA coding downstream 158765 11607016 ~ 11612075 (+)
G32549 LOC103376870 non-coding upstream 869893 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 1268806 10108906 ~ 10109150 (+)
G32437 apbb1ip non-coding upstream 1457920 9917320 ~ 9920036 (+)
G32418 NA non-coding upstream 1565319 9809884 ~ 9812637 (+)
G32325 NA non-coding upstream 1651203 9719039 ~ 9726753 (+)
G32674 NA non-coding downstream 184107 11632358 ~ 11637880 (+)
G32778 NA non-coding downstream 552712 12000963 ~ 12001164 (+)
G32892 NA non-coding downstream 1161150 12609401 ~ 12612533 (+)
G32893 NA non-coding downstream 1165034 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 1863163 13311414 ~ 13311742 (+)
G32539 NA other upstream 968459 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 1749294 9369898 ~ 9628662 (+)
G32286 NA other upstream 1838745 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 2029137 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 2993364 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 2991002 14439253 ~ 14486706 (+)
G33283 NA other downstream 3716097 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 4106568 15554819 ~ 15626955 (+)
G33406 NA other downstream 4595691 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 6001069 17449320 ~ 17452659 (+)

Expression


Co-expression Network