G32892


Basic Information

Item Value
gene id G32892
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 12609401 ~ 12612533 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41211
TGGCCGTCTTGCAGCTTGTCTTGCACCACTGGAGGGAGTCCCCTGCTGTGAGGGGAGGCAGCTGGTCTGGAATCCACCGAGAGCACAGAGCCCTGTGATGCAGcctgttttttttaaacttgccACACTAAGTGCTGTGTCTGCGATTTTTCCAGGTGCTGTTTTAGGCTCCTCTTCCATTCCATCAAGTTCAAAGTCATCCGCTGAATATTTAACTCGTGGTTTGTAAATTTTGTACTCCACCAACTTAACGCTGCTGCCCACTCCACCGTTAGACAGTGGCACTGTGACAGCGGGCTGTGGCTTGTTTTCCGTTTGTGCCTCCTTCGGCGTGGTGGCAGtggcaggcagagagagggcGGGCGGAGTGGGCAGCACACTTGCCTTTGGTACAGGCTCACTGCTCAGGACGGTCCTCTGCGCGGCTTGCTCCGTTTTCAGCTGCTTCACTCGAGTCCAGCTCAGATGCTCCCGCTGAATTTCAGTCTGCCGCAGTCTCTGGAACCGGGAAGGCTTCTTTCTCTCGTTGCTTTTCAAAGGCACTGCGAtttggctcaagaagaagcgcCTCTTCGGTTCCTCCTGCGGAGTATTAGCCGGGGGCACAGATGGACAGGCTGCCTCCAAGACCGGACTGTCACCAACAGCCTCGGACTCCTCCTTGGGCTCTACCCCCGCGGTCTCTAGCTTGCTTTGCTCCGACACGGCGCCTTCCTCCTCTTTCTTCACCTCCACTGTGTCCGAGGCAATATCGTCAGCTATCTCCTCACACAAAGCCAGTAAATTCAACTGCCTGGCAGCCCTCTTCGATGCCGCAGCCTTCTCCTCGGCGAGTGCTGCAAGCCGTGCCTTCGTCTTAGCTTGAGGGTTCATTTCCTGCCTTTTTGGAGGAGCTTGTTTggctttggttttctttgagATCTGTTTCCCTATATTAGGCAGCCCAGCTTTACTCAAGGAATCTTCCTGAGACTGTACAGGCAAGGAGCCTTTATCTGCCTGCCCCTCATCATTCAGCTGATCTGAAGAACAAGAGTCTCTCTCAGCTGCTCCTTGcaacacttttgttttaaggCAACTCTTATTTTCGACCACCTGTAACACAGATGAGTCTGTATTCTTTCCAGGAACTGAAATATTCTGTTTCTTATCATCACTGTTCGTGTCTGTAGTATCAGAGCCCACAGCCGCTTCAGTTGCTAGCGTCTTGGAGCTCGTTTTACCTTCATGGCTTGCAGTTTCACTGGATTCATCTGCATCCATTTTAAGCTTCTCTAAAATATTTGGATCAGTGCAACATCTGTTCAGGCCCTGTGCGTCTGCTATACATGCATCACCTTTCGCAGTAGATGAGGTCTTGTATAGATTTGATTCCTTAATAACTTTCAGAAGTGCCACCAACGGAGGGGAGGCCTTTTTCAGACCGGTCCGTTTGGTTTCCCTGCTCATATTCTTTTTCCCTTTCGTGCCAGGTGATGTTTCCTTAGACACATCCACAGTTGCTTTGCAGTTTTGTCTCGGAGCATTCTTCCCATCTTGAGTTTTACTTAGGCTTTGCTTTGTGGAGAGCGCAACCTTCTTGAAGGCCACCTTGCCATCCTCTTCTGAGACTTTAGAGCCCGGGGAATTCTGAAGTCCTTTGcctttgttgtcattttttctaGAAATCCGCCGTTTTGCATTTTCCTTAGGCACAGAAcaatctttcttcttcttcttcagatCAATGGGAGAACCTGTGTCCAATCGGTTTCTTTTCTGTGCTGGTCCCCGGTCAGACGAAGCCGCTTTTCCCTCTCGATTGCGCAGAGTCCTTACAGGCGTATCCTCGACGCTCAGTCTCAAAGATTCCCTTTTATTACCTTCCGGTCTTGGGGGGGCATCTGCTTTTTTTGTCATTCCTTCCGACTTTACTTCCTTTTTGCCAGAGGACTTGCTGGACTTCCTGGAGGCCTTTCTCCCCGACACCTGATTCCGGCCTCTTAATCTAGATGCCGAAGCCTTGCCTTTTGACTTCTTGAGCAGAATGTCTCGTGCTCTTCTTAAAGAGCTGTTTGCACTTTGCACTGGCCGCGACTGGCACGCTCTCTGCAAAGACCTGCTCGATGATGACTTTACACCTGCAGAGTTCTTTTTCTTCTGAGCGTCAGATTTAGGGTTCGTTTTCATCCTAGTCCTCGAACTTTTCCCTTCCTCACCCGTCTCTTCCGTAGGTTTTAGCTCGTTCTCTGCAGCAGATTGCTGGTTAATCTTAACCCTAGAGGACTGTCGTACAGGCTTCCTGCTACTAAGTGCTGTCGCGAGTTTCTTTGTATCTTTCTGCAAAGCGGGTGGCTTTTTCTTGGCACGAGGACAGACAAGAGTTCTTAGCGGATTTCTCTTGGGCTGTGTAGCCACTGCCTTCTGCTCTACTTTTCTCTTCTTGGCCTGAGACTCCAGTGAAGCTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41211 True 2449 lncRNA 0.50 2 12609401 12612533

Neighbor

gene id symbol gene type direction distance location
AMCG00019290 NA coding upstream 10884 12572727 ~ 12598517 (+)
AMCG00019280 thoc1,LOC106600433 coding upstream 155029 12446933 ~ 12454372 (+)
AMCG00019283 impa2 coding upstream 168550 12430978 ~ 12440851 (+)
AMCG00019282 gnal,LOC103396682,LOC106520735 coding upstream 197128 12407378 ~ 12412273 (+)
AMCG00019281 gnal,LOC107554377,LOC107732066,LOC107667176,LOC106520735 coding upstream 283563 12324271 ~ 12325838 (+)
AMCG00019289 mib1 coding downstream 29431 12641964 ~ 12671029 (+)
AMCG00019293 mib1,LOC106600429,LOC107747519,LOC107691191,LOC107550435,LOC107681781 coding downstream 96032 12708565 ~ 12722210 (+)
AMCG00019295 NA coding downstream 155421 12767954 ~ 12778615 (+)
AMCG00019297 rbbp8,LOC107732059 coding downstream 246447 12858980 ~ 12873054 (+)
AMCG00019300 NA coding downstream 269448 12881981 ~ 12882526 (+)
G32778 NA non-coding upstream 608237 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 971521 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1161150 11377956 ~ 11448251 (+)
G32549 LOC103376870 non-coding upstream 2101338 10463163 ~ 10508063 (+)
G32490 NA non-coding upstream 2500251 10108906 ~ 10109150 (+)
G32893 NA non-coding downstream 752 12613285 ~ 12613926 (+)
G33075 LOC104962440 non-coding downstream 698881 13311414 ~ 13311742 (+)
G33093 NA non-coding downstream 1021169 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 1540269 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 1673032 14285565 ~ 14286016 (+)
G32539 NA other upstream 2199904 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 2980739 9369898 ~ 9628662 (+)
G32286 NA other upstream 3070190 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3260582 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4224809 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1826720 14439253 ~ 14486706 (+)
G33283 NA other downstream 2551815 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2942286 15554819 ~ 15626955 (+)
G33406 NA other downstream 3431409 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4836787 17449320 ~ 17452659 (+)

Expression


Co-expression Network