G33075 (LOC104962440)


Basic Information

Item Value
gene id G33075
gene name LOC104962440
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13311414 ~ 13311742 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41445
tgtacatatgtattcatagcctttgctcaatactttgttgaagcacctttggcaccaattacagcctctagtctttttgagtatgatactacaagcttggcacacctatttttgggcagtttctcccattcttctttgcaggacctctcaagctccatcaggttggatggggagcatcggtgcacagccattttcagatctctccagagatgttcaatcgggttcaagtctgggctctggctgggccactcaaggacattcacagagttgtcctgtagccactcctttgtgatcttggctgtgtgcttagggtcgttgtcctgttggaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC104962440

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41445 True 329 lncRNA 0.47 1 13311414 13311742

Neighbor

gene id symbol gene type direction distance location
AMCG00019306 NA coding upstream 592 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 74588 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 149352 13153820 ~ 13162062 (+)
AMCG00019307 LOC106584358,LOC106613856 coding upstream 162230 13141611 ~ 13149184 (+)
AMCG00019304 NA coding upstream 198701 13031652 ~ 13112713 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding downstream 350480 13662222 ~ 13666577 (+)
AMCG00019316 NA coding downstream 358511 13670253 ~ 13674752 (+)
AMCG00019322 NA coding downstream 1361231 14672973 ~ 14698199 (+)
AMCG00019321 NA coding downstream 1403063 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 1585083 14896825 ~ 14901846 (+)
G32893 NA non-coding upstream 697488 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 698881 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 1310250 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1673534 11632358 ~ 11637880 (+)
G32671 NA non-coding upstream 1863163 11377956 ~ 11448251 (+)
G33093 NA non-coding downstream 321960 13633702 ~ 13638171 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 841060 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 973823 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 1180150 14491892 ~ 14492206 (+)
G33307 NA non-coding downstream 2172336 15484078 ~ 15533196 (+)
G32539 NA other upstream 2901917 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 3682752 9369898 ~ 9628662 (+)
G32286 NA other upstream 3772203 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 3962595 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 4926822 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 1127511 14439253 ~ 14486706 (+)
G33283 NA other downstream 1852606 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 2243077 15554819 ~ 15626955 (+)
G33406 NA other downstream 2732200 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 4137578 17449320 ~ 17452659 (+)

Expression


Co-expression Network