G33093


Basic Information

Item Value
gene id G33093
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 13633702 ~ 13638171 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41465
caaaGCGTATTCATTCTAATATAGTTAATTATCATGGGATCTTGGATTTCCTTTAAGATTTGAATAACAATTGTTTTTCTGCACCATTCTCTAAAATATTCATGCACTGTTTCAGGTGttaaaagatgaaaagatgttattttttacaACGTGAAGAACAGAGACAAAGCAATATGAAAAtcacaataatttatttttttgctaaaATCCAGTGACATACAGCTTTACAtagtaatgaaaaacacagtggTGGTGTTTGGCTTGGCACCTACTAGAACTGGTGGCCCTGGatacaacagtaataatatttttatcaaACTTAAGAGGAAATAATGTCATCCCACCCACCCTAAAAAGAGCAGTAACACTATCCTGAGGGGCTCAAGTAGAGACGTATTGTATATATTTCGcaaactttgttttgttcatgaacatagcattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacgattTATAATAGGCAACCAAAACTCTATTCTTGCTTTGGCCTATGAGTCACACTTTTTGAAAACAGTGGAGTTATTGGACCAATGAGTACAGTGGATCCTGAAGATTATGTCCAGGTTGCATTCACTTTGAATTTGTTCTGTGGAATTACACACTAtcagtattatgtattttcatgcaATGAGTTCTTGAAAGTTCAGTGTAGTTCCAGGACTTTTTGCACTTGAGTCAGtgcataaaaataacattttgtttctcgCTCTGCTTTGAGCCATAGGGACTGTTTTTTGGGCATAAACACTATCACAGATTTAGCTGAAACCACTCAACTTTCACAAATCAAGAACCTGGACTATTGAGACAAAGGGGTGttcaggaaatgtattttaatttaacattgcCTGTAGCCAGTTGTGTGTTCCAGCATCAGTAGGCAGTTTCCAGTGCAGTtagaaactatttatttagtaaattCCTACACTAAATTAACCTTTGTGTGTTGGAATACTATGaatatacatcaatatatattgAACAATGGGGAAACGGGGAAAGCTTGGCTTTGTACAACAGCACAGGTAACAAACTCATGTCCTACAAGGTGGTGTAGATGTTGAGGGTAtagtttacaaaatacaaaaactcaaGTGTGGTTTGAAAAAAATGGGAAAAGAGTGTGACAGCTCCAATGGCTCTTTCCAAACAAcactaatagtaataataaaataataataataataataataataataataataataataacaacaaataaaaagaaccTGTGGGTAAGGTATTATTCCCAGTAGGAAATTAATATTGACACAAAGAAAAATCTTCTACGCTAATATCCAAAGCACTATACAAATTCAGTTCTATCTAAaagcataaaatacatttgtacatcAGTTAATATTTTGACCTTGATAAAAACAGATCACCTTTCAAGATGTACATATACTTCATATTGCAAGGTGATCTCAATGTCCCCCTCCCATTTTCATTATtgctttataataatataattataaaaaaaaacactagaaGGGTTACAATGTGGGAAactaaaatctttttttttttctccccccaatTTACAATTTGATGCAAATGTCTGACAATCTGAAATATAAGGAATAAGGCAAAGTGTCTTTGGGACAGAGTCATGAAATCTCTGTTAAAACCTCTGCTGCATAACATTTAAGGCATCACTGCTATGAGagtaatgtattcaaatatgtgTCTTTCCAACATGATATGGTTTAGTTTTTGTCCGCGATCTTTAAGATGGACTTCAATGAACAATGGGTTCAACAACTGAGTTTCTCTCATTGGGGTAAACGTGAGCTCATTTGCAGTCCCTGTAGACTCTGACcacttatttcacatttaaaaatccattccatatatatatatatttattgtatacagCAACCCCAGCTTTAGACAGAATGTTGTAAACAGAAGGCTTTGTATATGTAAAAAGCCATTTCTTAATTATCTAGTCGAGAGAAGACTCAAACAGCAGCAGCCATTATGcagatacagaacagaaaagggCAAATTAGTGATTCTCATAACTGGAATAATTCCAGTCCTGAGGGCAGAACGTGGCTGCTAGGAGACCTTGCACATGGAATGTAACTTTTGTACCTCACTGCTGGTAATTCCCATATTGACcctgtgaagaaaacaaacatgcgTTAGTGCAACTTGTTTTCTACCATTAATTAAGTCAAAATATCtcctataaatatatttacataatataaaaagcaaatgcTGAAAAATCCTGAATGGTATGTTGAAGTTATCAATGCATATAAAACTTGGCTGATTCATACACAAATCTAATTGGCATCAATACTGAAAAATTCCACCAGATGGTAGCATGGTTCTACATCAGAAGAATCTATACATGACACAAGTCTATACTGTTAACATCTCTCTTACTTATAAACCAATTGTTCACAATGCAATGTTTATATAATTCTCAGCGACTTCAGCAATTACACGTTTATTTCTAAACAGGGGTCGAAACGGCTTTATTCCCTAGGTTAGCCAGACGGGTTCAAATGCTTCAAGTTCCACTTTGTACAGTACAAGCTAGACAGAAAATAGCCACTGTAAGCAAAATAACTGTGCcttctttatttatgtaatactTCCGATAGTCAGAATTTAAGTAGTGCAAACATAAGAAATCTCTTTCAAATGATTACATGTTGTCTTTGGTTTGGATTATGCAGCACTTATAACAGTTTGGGTTGAATGGATTGTTCCTTTGAAGAATGGCTGTCACTCATCTCGGTGCAGGACCTCGTGTATTCGTTTTTTTTCGACCCCTGATTacaaagcaatgtaaaataaagaagctgggaaaaaaaatgtttatattttacattccaTATCTATAAATGACTAAATTTGAATTCAAGGGCTTCACAATAACCATTACCTTCATGTCTTATAGATATAGTCAGGGGTTCAAATAACCGGTCCTTATTTCCTCATGAGAGCctgaatttcaaaaataaagatatCAAAGAATAGCTGGGCCTCAGCTAAGGACCACATTGAATACACggcaacatgttttttttttttgtcctctccctctctgcggtctttctccttctccctccccttgtcccatgtctctctctccctctccctccatatttccctctctgtttctttattttgcttgtGTGGGTAGAGCACAGGAACAAGGGCCAGGACACACTGAGTTCAATCCCCATCTCTGCCACCAACTCACTGCGTAGGCTAAAGCAGATCACTTGACCTCATTGTGTTACTTTCCTCCCAGCTGTAACATTTTAGAGCAGGACCATTCACCGTTAACAAGgagctgcattttatttaatccaactttaaaacaatacatttgaaaattgaCATATGCATGCACTTTTAATATTCCAACAACATAGGCCACCAAAGATGTACCTCTAAACTCtgagcatttcatttaaattatggCAACATTAAAATAGTAGTCTTACACACTAGTCTTCATTCAATGCCCCGAGTCCCCAAATTGTTCTTACCTGGTCATATCCGTAGGTGCGCTGCTGTTGTGGCTGTGGTGGGCCTGGCTGGGGAGGCCTGTATCCCCCATACTGGGGTCCCTGCCCCTGTGTGTAATTGGGGTATTGTCCTGGGGCTGCCTGAGAGGGTCCTGCAAAGAGAAGAGATGGAAAGAGTTTGGGATATTTACCCAGTGTTTAATTCTCAGTCCACCCAAATGCATAACTATAAACCATTCACAGTCCAAACCGATATTAATGGTAGACTTCAAAGACACTTGACTGCTTCTAAAATACTTATAAAGAGACCTGTGTTGTCAATTAACTCTCTCTGATATACTCTCttactggtttaaaaaacatgGTTCCTCACAGAGAGATATATTCCAGCATAAGTAGTATAAGAAATCCAGTGTCTTGGACATGAACATACATTTGCTATAACCTACATCTGTTCATTTGTACAGTTTTCACACTAACGACACAATGATCAAGGATTGCATATATAATTAAGAACAATTAAGAATTGCAATTAAGCAGGTTCAAAATAAGATGCTCTGATACGTACCTAAAATAAAGGGTTTACTGTATACACTTCTCAGGTCTTATGAACATGTTCATACAATTTGCATAGTTTGCCACCAGAATAGTAAGCAGTTGAGATTTGGTGAGCAAATGAAAGGTCTGGATAGCATACTATTGGAAAAGGTGCAGTGAATGTAAACAATTAATGGTATGGTCATTCTTTACATGTTCATGGGCTTGATTTGGTATCAGGCTTCACATGAAATAGTCTAGTAATCTAGTAATCCTCTAGTGAAGGCATTAAGTGATATCATTAAGAGTaggtttaattaaattctgCACTACCTTCTGCATAGGCACATTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41465 True 4416 lncRNA 0.36 2 13633702 13638171

Neighbor

gene id symbol gene type direction distance location
AMCG00019306 NA coding upstream 322880 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 396876 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 471640 13153820 ~ 13162062 (+)
AMCG00019307 LOC106584358,LOC106613856 coding upstream 484518 13141611 ~ 13149184 (+)
AMCG00019304 NA coding upstream 520989 13031652 ~ 13112713 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding downstream 24051 13662222 ~ 13666577 (+)
AMCG00019316 NA coding downstream 32082 13670253 ~ 13674752 (+)
AMCG00019322 NA coding downstream 1034802 14672973 ~ 14698199 (+)
AMCG00019321 NA coding downstream 1076634 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 1258654 14896825 ~ 14901846 (+)
G33075 LOC104962440 non-coding upstream 321960 13311414 ~ 13311742 (+)
G32893 NA non-coding upstream 1019776 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 1021169 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 1632538 12000963 ~ 12001164 (+)
G32674 NA non-coding upstream 1995822 11632358 ~ 11637880 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding downstream 514631 14152802 ~ 14160703 (+)
G33153 NA non-coding downstream 647394 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 853721 14491892 ~ 14492206 (+)
G33307 NA non-coding downstream 1845907 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 2290398 15928569 ~ 15931201 (+)
G32539 NA other upstream 3224205 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 4005040 9369898 ~ 9628662 (+)
G32286 NA other upstream 4094491 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 4284883 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 5249110 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 801082 14439253 ~ 14486706 (+)
G33283 NA other downstream 1526177 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 1916648 15554819 ~ 15626955 (+)
G33406 NA other downstream 2405771 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 3811149 17449320 ~ 17452659 (+)

Expression


Co-expression Network