G33141 (cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087)


Basic Information

Item Value
gene id G33141
gene name cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 14152802 ~ 14160703 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41531
GAAAATTTAATTAGACTATCAAACAATGTCATTCTATCAAACCAAATGAGTTAAGAACATTGGACTTTCTTTTTACAGAGATCCAGACACAGTGAAGTGGAAAAAACAATTCAGAAACAGTCACTAGCTCCAAAATTAGCATTTTATTCGGATTGTTGGGGTCAGAgatgtataatttgtattctgGTACATATTATCCGCAAAGCCGCCGTCAAAAACCTTTCCAGTCTTAAAGCTGTTTCAGTTATTAGTGCCACTGGTGTCATAACACCCCCTTTTTTGGTACGAATTCAAACAGTTGTGCTGATTAGATTCCTATTTTTACAAAAGGCTATTTCTTACTTTCCATTATGTCACCCATTTGTGtaaatgtcattttgttttgtaaataaatttTGGAAATAcctttttataatgaaaagataaaaacatgcaaaaaactTGAATCTGTAGTccaaattatacatatacaagtTCTGAACTTTTTGCACTTCTTCATAGACTACGCCAAAAAACATTATGTACACGCATTTTCTTTACAGTGAAGTAAAAATCAAAGTACCAGAGGTTGACTAAGGCAAATAAAGTGTACATGgattagaacaaaataaacattttcgaAAAATACTATACcacttcagaaaaacaaaaactgattcCGCTACAAAATGATGATTTATGACTCCCTTTATTTGCAACCAGCTGCATAAGTTTAAAATTTTTAGTGAAAAAATCTATCTAAAAGTCTAGCGCACTGTACATTGCTGTTTTCAGGTGTTTCTCCCCCTCCAAGCTAACAAAGATCCTTCCAtgactttttcatatttttttccccattcgcttaaatatttgtattaaacaaacaGCAGTATGGTGTAACCAAAAAGCATGTACAAGCATACCATTTTAACATACTTCCTTAGTTTTGAAATCACTCCAAAAGTCAGTACCATTAAAGCCTTGAACATAAAACTAAGTATTCAGAtccaaaaatgtacaaaaaggcACATAAAATCCCAGTGCTTCTGTACTGTGAAATTCAAGTGTAACTGAGCGCTCTTTTAATATCAACGATCCAAACAGTGTCAGTTTACCAATGTTCCCTCTGAGCTCGAATTTGATTGCAGCCTATGCCAAAGCCTTCAACAAGCATATGTGCTAGTAGACTACAAAGTTAAAGCCtagctttttttgtgtttttttgtgtttttttgtttgttttgtttgatctcTCTTCGGGAATATCGGTTTTAGAAGCTGTCCTTGTCCCATAAAAAAGGTGCCACTCAATTTTTAATTAGTCGTCGTTTCCACCATACATGTCTGCAAGTTTCTTAAACCTTGGTCCCCAGTCGTTGAGGTAATCATAGTCCTGGTCGCCTCCACTACTGGAAGAGTTGAGGGAGCTCAAAGAGCCTGCTGTGGATCCACTGCCTTCATAGTCAAACACCAACAGGGAGTCATAGGGTGGAGCTGTTGGGTCGTTGTCTGCAGCCTTAAGTCCcTCATTAATGAAGTCACCAATATCCCCTGGGTGAGGAGCAGCTGATCTTACTGGATACTGGGGCTCGGGATGAATTGGTCTCTCATCAAGACGTCTAATACCAACAGGCTTGATGGCATCCGGCTCTACTGTATCAGGCTGCTGAAGCTGGCTCAGATCATAATCCTGATCCTCCTCTCCGCCCC

Function

symbol description
cdh2 Predicted to enable cadherin binding activity and calcium ion binding activity. Acts upstream of or within several processes, including animal organ development; embryonic morphogenesis; and nervous system development. Located in perinuclear region of cytoplasm and presynaptic membrane. Part of catenin complex. Is expressed in several structures, including germ ring; immature eye; mesoderm; nervous system; and pericardial region. Human ortholog(s) of this gene implicated in agenesis of corpus callosum, cardiac, ocular, and genital syndrome; arrhythmogenic right ventricular cardiomyopathy; and arrhythmogenic right ventricular dysplasia 14. Orthologous to human CDH2 (cadherin 2).

NR:

description
PREDICTED: cadherin-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41531 True 1689 lncRNA 0.37 3 14152802 14160703

Neighbor

gene id symbol gene type direction distance location
AMCG00019316 NA coding upstream 478050 13670253 ~ 13674752 (+)
AMCG00019314 psma8,LOC100304914,LOC103029839,LOC105907112,LOC105011885,LOC107572146,LOC102789190 coding upstream 486225 13662222 ~ 13666577 (+)
AMCG00019306 NA coding upstream 841980 13292718 ~ 13310822 (+)
AMCG00019309 NA coding upstream 915976 13214956 ~ 13236826 (+)
AMCG00019308 NA coding upstream 990740 13153820 ~ 13162062 (+)
AMCG00019322 NA coding downstream 512270 14672973 ~ 14698199 (+)
AMCG00019321 NA coding downstream 554102 14714805 ~ 14720892 (+)
AMCG00019325 NA coding downstream 736122 14896825 ~ 14901846 (+)
AMCG00019331 NA coding downstream 742639 14903342 ~ 14907478 (+)
AMCG00019324 NA coding downstream 753322 14914025 ~ 14927971 (+)
G33093 NA non-coding upstream 514631 13633702 ~ 13638171 (+)
G33075 LOC104962440 non-coding upstream 841060 13311414 ~ 13311742 (+)
G32893 NA non-coding upstream 1538876 12613285 ~ 12613926 (+)
G32892 NA non-coding upstream 1540269 12609401 ~ 12612533 (+)
G32778 NA non-coding upstream 2151638 12000963 ~ 12001164 (+)
G33153 NA non-coding downstream 124862 14285565 ~ 14286016 (+)
G33161 NA non-coding downstream 331189 14491892 ~ 14492206 (+)
G33307 NA non-coding downstream 1323375 15484078 ~ 15533196 (+)
G33392 NA non-coding downstream 1767866 15928569 ~ 15931201 (+)
G33404 NA non-coding downstream 1842093 16002796 ~ 16003201 (+)
G32539 NA other upstream 3743305 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 4524140 9369898 ~ 9628662 (+)
G32286 NA other upstream 4613591 9261374 ~ 9539211 (+)
AMCG00019215 mpp7,LOC107657298,LOC107584397,LOC107721969,LOC104966300 other upstream 4803983 9329479 ~ 9348819 (+)
G32130 itgb1a,LOC107566918,LOC107713907,LOC107734314,LOC107565694,LOC107653806,LOC106590025,LOC104924090,LOC106578567,LOC105019428 other upstream 5768210 8345455 ~ 8384592 (+)
G33159 LOC103376870 other downstream 278550 14439253 ~ 14486706 (+)
G33283 NA other downstream 1003645 15164348 ~ 15169841 (+)
AMCG00019345 NA other downstream 1394116 15554819 ~ 15626955 (+)
G33406 NA other downstream 1883239 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 3288617 17449320 ~ 17452659 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G217308 NA non-coding CI01000051 null 1014815 ~ 1017172 (+)