G33392


Basic Information

Item Value
gene id G33392
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15928569 ~ 15931201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41845
TACTTCACCAACAACCCAGAAGGAAAGAAGGAGAGAACCAATCTTCCTCAGAAAGTTGCCTTCTGAGACTGAAGTTGAAAACTAAaaTCACTGCTcaaccacagaaaacaacaacattgaaaaTGGCATCTGTTCCATCAGCTGGCTGTCTGCTTGCAAGAAATCAGTTCTACAGAGCTCGGCTCAATTCTACTTCTAGTAATTCATCGTCAAATTCTTCATGCTGCGATCACATAGCTGACGAAAAGACACCTGCTCCACATGgTATACAAGTGCCATTTGAAAAGTGCTGGTGGCTAAAGAATTTCTTTGTCTGTGAAATCAATCATCATATTACCACAGACTCTTCTTGATAACAGTTAATccatgctgaagatagttcctGCGTACTGTAGGAGTAAGAAGTAATTCCAGCTGCTGACTCATGGTCTCCGTGTCTCAGGCTCAACTATCTCTCCAGCTGTAGGATCAGTGAAGATTCATCCAACGGCACATAAGGAATGTGGAGGACAGGAATACTCTTGGTAGCTTGCAAAAAGGTTATTTGGTTGCTTAGTATGTCGTCAGAAAACTGAATCAGTCTCTGCAGCGGATACATTGCCAGTTAACTGGTAATATGAGACTAGCCTGCTAGTGgtcttattttaaacatatgaaCCTGACATTACTTTCAGATGacctactttaaaaaaataggtAATAGAGGCGCTTAGTCACTGACTGTATACTTGCATTCACAAGAAGCCGGCAGCAAAATTGGCAAGATAGTTAACTAATTAATTGCACAAGCCAAAGATTTAGACCATCTAAAGATGTTTAACTGCTAGGTTAAAGCAGATGTGGGGCTATTGTATTTGCTACACAATCATATCATCCATGATTTAAGATAAAATGCAAAGTCTAACCATGAGCTAGTggcacaaatgcacacacaaacaattgcAGTTGTAATTGACATAGGCAGAAGTATAACATATGtatcattaattaaacaaaatgtgtatttaaatgttcatcTGTATTTTTTCTAAGACTTGTATTCCATTtttatactaattaaataaataaacatgtattga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41845 True 1079 lncRNA 0.38 5 15928569 15931201

Neighbor

gene id symbol gene type direction distance location
AMCG00019350 ub2v2,ube2v2 coding upstream 223489 15693042 ~ 15705080 (+)
AMCG00019346 mcm4,LOC106569128 coding upstream 239720 15681904 ~ 15688849 (+)
AMCG00019344 NA coding upstream 347555 15566655 ~ 15581014 (+)
AMCG00019347 mapre2 coding upstream 398658 15520426 ~ 15529911 (+)
AMCG00019342 NA coding upstream 448833 15436315 ~ 15479736 (+)
AMCG00019354 sntg1 coding downstream 309181 16240382 ~ 16266099 (+)
AMCG00019365 NA coding downstream 562266 16493467 ~ 16856282 (+)
AMCG00019361 NA coding downstream 1112895 17044096 ~ 17050175 (+)
AMCG00019368 NA coding downstream 1144469 17075670 ~ 17078562 (+)
AMCG00019367 NA coding downstream 1158868 17090069 ~ 17091118 (+)
G33307 NA non-coding upstream 395373 15484078 ~ 15533196 (+)
G33161 NA non-coding upstream 1436363 14491892 ~ 14492206 (+)
G33153 NA non-coding upstream 1642553 14285565 ~ 14286016 (+)
G33141 cdh2,LOC102201754,LOC101473079,LOC102787731,LOC103371087 non-coding upstream 1767866 14152802 ~ 14160703 (+)
G33093 NA non-coding upstream 2290398 13633702 ~ 13638171 (+)
G33404 NA non-coding downstream 71595 16002796 ~ 16003201 (+)
G33408 NA non-coding downstream 169757 16100958 ~ 16101159 (+)
G33422 NA non-coding downstream 434913 16366114 ~ 16366342 (+)
G33444 NA non-coding downstream 557670 16488871 ~ 16491053 (+)
G33448 NA non-coding downstream 565640 16496841 ~ 16504076 (+)
AMCG00019345 NA other upstream 301614 15554819 ~ 15626955 (+)
G33283 NA other upstream 758728 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 1441863 14439253 ~ 14486706 (+)
G32539 NA other upstream 5519072 10404639 ~ 10409497 (+)
G32293 armc4 other upstream 6299907 9369898 ~ 9628662 (+)
G33406 NA other downstream 112741 16043942 ~ 16081943 (+)
AMCG00019376 NA other downstream 1518119 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 3073823 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 3354335 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 3520046 19451247 ~ 19455137 (+)

Expression


Co-expression Network