G33393


Basic Information

Item Value
gene id G33393
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 15858177 ~ 15931208 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41846
CTTTGcatcaatacatgtttatttatttaattagtataaaAATGGAATACAAGTCTTAGAAAAAATACAgatgaacatttaaatacacattttgtttaattaatgataCATATGTTATACTTCTGCCTATGTCAATTACAACTgcaattgtttgtgtgtgcatttgtgccACTAGCTCATGGTTAGACTTTGCATTTTATCTTAAATCATGGATGATATGATTGTGTAGCAAATACAATAGCCCCACATCTGCTTTAACCTAGCAGTTAAACATCTTTAGATGGTCTAAATCTTTGGCTTGTGCAATTAATTAGTTAACTATCTTGCCAATTTTGCTGCCGGCTTCTTGTGAATGCAAGTATACAGTCAGTGACTAAGCGCCTCTATTacctatttttttaaagtaggtCATCTGAAAGTAATGTCAGGttcatatgtttaaaataagacCACTAGCAGGCTAGTCTCATATTACCAGTTAACTGGCAATGTATCCGCTGCAGAGACTGATTCAGTTTTCTGACGACATACTAAGCAACCAAATAACCTTTTTGCAAGCTACCAAGAGTATTCCTGTCCTCCACATTCCTTATGTGCCGTTGGATGAATCTTCACTGATCCTACAGCTGGAGAGATAGTTGAGCCTGAGACACGGAGACCATGAGTCAGCAGCTGGAATTACTTCTTACTCCTACAGTACGCaggaactatcttcagcatggATTAACTGTTATCACTGCCGGgacagacacaaataaaaaaaatgatttcaggTGAATTAATATAGCAGCAGTGTGGAAAAGTGAtaagggctctggactctgaaatgaaaggttgtgagttcaatcccaggtgggggacacaaCTATTGTGCTTTTCTTAAACATAAACTGCTCCAGTACaaactcagctgtataaattgataattctatgtaaaaatattatgatatattgtaacaatttgtaggtaccctggataagagtgtctgctaagaaataatatgaCACATTGTAACTTGCTGTACAATGTGTCACAGCCTGGAGTTTCTGCCCTCTAACATTTGAAgcgaaaaaaaaacaagacaaaactcACACTGTCCTAATTGATATCTTCTAACAAGGTGCTGCAGTTGGAAATCTAAGTAACAGGTATACATGAAACTCCTTTATCTTCAGTTCACTAGATATTAAGAAATGTTCTGTACTTTTCCCCCTGAGGATAACTGGCTATTTGCTGTGAGTattgtggtgttttttctttttcacctattttgattaattttgatGATGCATATGATAACAATTGTACATCATACATTTTCAAGCATGTACATCCTGGTTTCCAACAGTGTGTTCAGTTGGTAGATAGGACATAACATttgtttcaacatgttttttttttttttttttttttttttt
>TU41848
CTTTGcatcaatacatgtttatttatttaattagtataaaAATGGAATACAAGTCTTAGAAAAAATACAgatgaacatttaaatacacattttgtttaattaatgataCATATGTTATACTTCTGCCTATGTCAATTACAACTgcaattgtttgtgtgtgcatttgtgccACTAGCTCATGGTTAGACTTTGCATTTTATCTTAAATCATGGATGATATGATTGTGTAGCAAATACAATAGCCCCACATCTGCTTTAACCTAGCAGTTAAACATCTTTAGATGGTCTAAATCTTTGGCTTGTGCAATTAATTAGTTAACTATCTTGCCAATTTTGCTGCCGGCTTCTTGTGAATGCAAGTATACAGTCAGTGACTAAGCGCCTCTATTacctatttttttaaagtaggtCATCTGAAAGTAATGTCAGGttcatatgtttaaaataagacCACTAGCAGGCTAGTCTCATATTACCAGTTAACTGGCAATGTATCCGCTGCAGAGACTGATTCAGTTTTCTGACGACATACTAAGCAACCAAATAACCTTTTTGCAAGCTACCAAGAGTATTCCTGTCCTCCACATTCCTTATGTGCCGTTGGATGAATCTTCACTGATCCTACAGCTGGAGAGATAGTTGAGCCTGAGACACGGAGACCATGAGTCAGCAGCTGGAATTACTTCTTACTCCTACAGTACGCaggaactatcttcagcatggATTAACTGTTATCACTGCCGGgacagacacaaataaaaaaaatgatttcaggTGAATTAATATAGCAGCAGTGTGGAAAAGTGAtaagggctctggactctgaaatgaaaggttgtgagttcaatcccaggtgggggacacaaCTATTGTGCTTTTCTTAAACATAAACTGCTCCAGTACaaactcagctgtataaattgataattctatgtaaaaatattatgatatattgtaacaatttgtaggtaccctggataagagtgtctgctaagaaataatatgaCACATTGTAACTTGCTGTACAATGTGTCACAGCCTGGAGTTTCTGCCCTCTAACATTTGAAgcgaaaaaaaaacaagacaaaactcACACTGTCCTAATTGATATCTTCTAACAAGGTGCTGCAGTTGGAAATCTAAGTAACAGGTATACATGAAACTCCTTTATCTTCAGTTCACTAGATATTAAGAAATGTTCTGTACTTTTCCCCCTGAGGATAACTGGCTATTTGCTGTGAGTattgtggtgttttttctttttcacctattttgattaattttgatGATGCATATGATAACAATTGTACATCATACATTTTCAAGCATGTACATCCTGGTTTCCAACAGTGTGTTCAGTTGGTAGATAGGACATAACATttgtttcaacatgtttttttttttgttagtttttttaactgAGATGTAAAccagataataaaacaaacctaCAGATAGAAACTATTGTGGATATTCAACTATACAATCACCTCTGTCCCACAGTTTTTAGTtaactataaataaattgaCTACTTTTCATTACACTTGCCTGCTTACAGAAGAGTCTGTGGTAATATGATGATTGATTTCACAGACAAAGAAATTCTTTAGCCACCAGCACTTTTCAAATGGCACTTGTATAccttaacaaataaacaaagtttTGTTTAGAGGACAACAAAAgcaatgatttaatttattttaacatcccCAAAATGTCCCCACTAACcaagtttgtgttaaaaaactgcttgttttaaacattaaacaattatttgaagTATAATGAtactattatataataataataataataataataataataataataataataataataagttccCCATCAGCTCCAAAGGCTATATAGTTGATTTTTTATACTGAAGTTATCAGTATAAAAAATGTGTACTCACCATGTGGAGCAGGTGTCTTTTCGTCAGCTATGTGATCGCAGCATGAAGAATTTGACGATGAATTACTAGAAGTAGAATTGAGCCGAGCTGTAGAACTGATTTCTTGCAAGCAGACAGCCAGCTGATGGAACAGATGCCAttttcaatgttgttgttttctgtggttgAGCAGTGACTGACAAAATCATAAGAAATGTGTTATACTTCATGCATCCAGAACTGCTGTACATTAGTTCAATTGAAAAGGATAGCATACACATacttatattaatttaaacatatacattttgtgttgaaaaaataataagctgTTTGAAATTAATGTCTACAGTCAAAATGGTAAGAGGTTTAACTTAATTCGAAGAAAAAATAGTctgtacagaaaaaataaaaaaatacttacttTTAGTTTTCAACTTCAGTCTCAGAAGGCAACTTTCTGAGGAAGATTGGTTCTCTCCTTCTTTCCTTCTGGGTTGTTGGTGAAGTAGCTACTGAGAGAGCTGATCTGGTGGTTTTATAGAGTTTGGGCAGGGCCGTAAATAGTGGAGTGCAGCCAAACACGTGGACAGAGAGTGCAACAGACAGAAAGGAATTTTCTGTCAACGTGCCTG

Function

GO:

id name namespace
GO:0010608 posttranscriptional regulation of gene expression biological_process
GO:0034248 regulation of cellular amide metabolic process biological_process
GO:0006417 regulation of translation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41846 False 1419 lncRNA 0.35 2 15858177 15931208
TU41848 True 2535 lncRNA 0.34 2 15928445 15931208

Neighbor

gene id symbol gene type direction distance location
AMCG00019348 NA coding downstream 176847 15632482 ~ 15681330 (-)
AMCG00019349 NA coding downstream 228176 15628489 ~ 15630001 (-)
AMCG00019343 NA coding downstream 307149 15533235 ~ 15551028 (-)
AMCG00019340 NA coding downstream 498109 15359700 ~ 15360068 (-)
AMCG00019341 NA coding downstream 499514 15358008 ~ 15358663 (-)
AMCG00019352 NA coding upstream 56955 15988163 ~ 15988928 (-)
AMCG00019356 NA coding upstream 459169 16390377 ~ 16421282 (-)
AMCG00019355 pcmtd1,LOC107732114,LOC107717289 coding upstream 523532 16454740 ~ 16474345 (-)
AMCG00019357 NA coding upstream 576430 16507638 ~ 16552225 (-)
AMCG00019358 NA coding upstream 785157 16716365 ~ 16760441 (-)
G33291 NA non-coding downstream 602154 15254032 ~ 15256023 (-)
G33285 NA non-coding downstream 673640 15182780 ~ 15184537 (-)
G33282 NA non-coding downstream 696210 15161712 ~ 15161967 (-)
G33268 NA non-coding downstream 795826 15061774 ~ 15062351 (-)
G33206 NA non-coding downstream 1139944 14714791 ~ 14718233 (-)
G33419 NA non-coding upstream 340859 16272067 ~ 16311866 (-)
G33461 NA non-coding upstream 687094 16618302 ~ 16618691 (-)
G33531 NA non-coding upstream 1112810 17044018 ~ 17044239 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding upstream 1118306 17049514 ~ 17049746 (-)
G33533 NA non-coding upstream 1118789 17049997 ~ 17054332 (-)
G33381 ube2v2,LOC107732116 other downstream 136725 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 866181 14951842 ~ 14991996 (-)
G33163 NA other downstream 1299887 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 2192947 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 2669885 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 2453659 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 3363604 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 3511187 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 4812322 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 6739439 22670647 ~ 22744182 (-)

Expression


Co-expression Network