G33474


Basic Information

Item Value
gene id G33474
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 16798149 ~ 16800927 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU41941
CTAATTTGAAACTATGTTTTATGTCTCTTCCTGAGAAGAAAGTGTTATAAACCATAGCACTGATTGCAATTTGTGCAAGAAAACATCCAGGATACCTACAGACTTCAGTATTAGTTACaacatatgaatacattaaatcattCACAACTGAATTTGGAAAATAAGTTATTATCCCAAATTAAGGATTATTAAGCACAGTGATCTGGTTTTCAATAAGGGAATAGTAAGAGACATACAATAGGCTTCAATATAGAAATAATAGTTTGTAATATCTTTGTATGACTGACCTGGTTTGAGATCCAATGCAGTAAGAGACTCTGAATGGAGGAAGTATAAGGTCGGCCCCACAGTAAACAGTACATAATTATCATGTCTTTCATCCAAGATAATAAGAACCAAATCCCCAACCTGAAAACtgaacTCTCTTATAGCTATTTTTTCAGAATGCCGTGAGGACACCGAAGACATGCTCTGAGACATCTGGAAGGGGGATAAGAAAAAGCTATTTAGGTTTTTACTGACGACAAATTGAATGTTCCTACTCACACACATGAACATGCTTAAACTGAATGCTCACTATGGCAATAGACGGTTTCATATGCAGCGTAAGCCCTGCAGCATTTACATAGTGATCTAAATGAAAGAGCAACTCATGGGTCTGAATCCTGATTTGTGATAGGACATTTGTCTAGTTGCACATCGTATAGGCTATGCAGTATCCTTCAGAACACCCCCTACCCTCCCACTCTTAACCCAAGCAGCATGTTAGCAAGCTGTCATTTGGAATGTGACTGTATTGGACCTGATCTTTACAATACCATTTTATTAGACTCATCAGAACGTGAGCTATGAAAAGAAATGTTAAAGGCATGTTATTTAAACCACTTAAGTAACATATAGCAGATGTTTAAAAAATCTGTAACCTGGGAGTTCCGCCTTAAAATTAATCATTACCTACCTTGTTCTGTGACTATACAAAACGGTCCCTTGTGAAATACAGTACGTTAAGAAAACATGCACTTATAAAAATGAGGTGAAGACCAAAAAACAGTATACTACAGTGCAAATTACCCTGAAGCAGTACCAGTCTTCCAAAGCCATCTACTGAAACTATTGTTACCTGACATTGTGTAAGAAAAGAgttatgacaaaaataaagtggATTTTAATACAGCCTGTTAACATTATACAGAATACTTCCTTCTATCAAAATGACAATTCAATTTGATTTGCATTGCCAATGTCTGCTGTTAATTTATGTGTTACCATATGTTTGAATTTATAGTATTTGTGGCAGACTACTATATCTGCAGCTTGTCTATGACTGCATTTTTTGAGCTTTCGGACAAGCTGGATATTattctgatttgtattaatttattagaggATAGTTTTACCCAGGGTTACCTACAGATTTTACAGCAATACACAGTTCCAGAAACATATGACAGTATGGGGAAGAACAAACAATATACAACTTATAAAGTGTAAAATTAAGTATGAGCAAGTATGAAATACAGTGCATTATTCTAGTTAGAGGAAGTCTGGTGGTAGTTcagataaaagaaaatatgaagtGTGGCATGCAGCAGAAATTAAATGGAGCTTGGACAAAATCATGGAGTTAGATCAGTAAATGTGatgtaaaacaatgttcttaatttttttcttagcagatgcgTCCTTTATCTGAACCTTTTCTGAAAGTAGTGGTCAAGGTTTCTTGGAAATAAGGCAGCCTTTTCACTGATCCATGGGATTGATGGAACtggtgcattttaaaatgcaggtttaGTTTGACTGTTTAAGTTAATTATTGGTGTGAAAAGCAAACTCACAAGGTGCCTTCATAAACACCTTCTGTTCTTTACTATATTGTACTTACTATAAACTGCATGATCCCATTTTAGTGCAGTACACATCTAAGAGTGAACTAAATGATAATTACTAAATAAGCTCACAGCTTGTCCACAGAAGTAGCACGCAACTCTCTTCCACAACTAATCTTACAGGAAACAGCAAACATATCTCAGAGTTGCCGTTAATAAACCTTTGatattaggaaaaaaaaaaatatatatatatatatatattatgtcaGAAAGTGCAAAAGGATTTGAAGGATTTGCTTTTGGAGGTGATTAAGACTTAACAGAAGACAGATGGTAATACATTGCTAAACCCGGCTTATGAAATACAGAGTATGTGTACTTGTGGTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU41941 True 2221 lncRNA 0.35 2 16798149 16800927

Neighbor

gene id symbol gene type direction distance location
AMCG00019354 sntg1 coding upstream 532050 16240382 ~ 16266099 (+)
AMCG00019353 NA coding upstream 667709 15929875 ~ 16130440 (+)
AMCG00019350 ub2v2,ube2v2 coding upstream 1093069 15693042 ~ 15705080 (+)
AMCG00019346 mcm4,LOC106569128 coding upstream 1109300 15681904 ~ 15688849 (+)
AMCG00019344 NA coding upstream 1217135 15566655 ~ 15581014 (+)
AMCG00019361 NA coding downstream 243169 17044096 ~ 17050175 (+)
AMCG00019368 NA coding downstream 274743 17075670 ~ 17078562 (+)
AMCG00019367 NA coding downstream 289142 17090069 ~ 17091118 (+)
AMCG00019369 NA coding downstream 318421 17119348 ~ 17120947 (+)
AMCG00019370 NA coding downstream 353943 17154870 ~ 17214411 (+)
G33448 NA non-coding upstream 294073 16496841 ~ 16504076 (+)
G33444 NA non-coding upstream 307096 16488871 ~ 16491053 (+)
G33422 NA non-coding upstream 431807 16366114 ~ 16366342 (+)
G33408 NA non-coding upstream 696990 16100958 ~ 16101159 (+)
G33404 NA non-coding upstream 794948 16002796 ~ 16003201 (+)
G33521 NA non-coding downstream 256659 17057586 ~ 17058220 (+)
G33585 NA non-coding downstream 514746 17315673 ~ 17320035 (+)
G33615 NA non-coding downstream 621697 17422624 ~ 17424898 (+)
G33634 NA non-coding downstream 630026 17430953 ~ 17432628 (+)
G33750 NA non-coding downstream 1342569 18143496 ~ 18144704 (+)
G33406 NA other upstream 716206 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 1171194 15554819 ~ 15626955 (+)
G33283 NA other upstream 1628308 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 2311443 14439253 ~ 14486706 (+)
G32539 NA other upstream 6388652 10404639 ~ 10409497 (+)
AMCG00019376 NA other downstream 648393 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 2204097 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 2484609 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 2650320 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 3806547 20607474 ~ 20610889 (+)

Expression


Co-expression Network