G33533


Basic Information

Item Value
gene id G33533
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17049997 ~ 17054332 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42004
CTGGATAAAATTCTTGTGCTTTATTGTCGTTCAAAGAATTCAAATACCCACAATTTGTCCAGTGTTTTCATCAGTAAAATAACtcccaagaaaaaaacaaatctttaaaaacaaatataaacattcaCAGATTAATAATTAGAGATGCATTTTTAagcaaactgatttaaaaataatacattttactacactcaaaaaaattaaatataaaaaaagatataggCAGTATTACTCCAAACCATTGGTTTAGATACATTGAGGTTGATCTATATTATCTTTCCATCAGCTCAACTTGAACATATCAAGTAAGTATACTCAGACAAGTGGAAGTAGCCCACAACCTTAAACCACCGCGAGTGGCTACGACATCGTCATTTGTAAATGTGGCACGAggtttaaacaaatacagcccATGTCATAATTGTCACAAACTAAATGTCAAGGCACTTCCCCAATTGTAGCTCTTGTCTTTGAGTACATGACATGTAATTCTAGCAAAAAGTAACTTGGCAACTCCAAAGTTTCAGAAAGTTTCTctatgagtgtgtctgtgtatatcaCTATCaacctatattgatccactgctggctGATGGCCTCCCCAAGATCTTATCACTAGTTTTGATCTATAGTTTCTCTTttccgtgtgtgtgtatatatatacatatgtatatctatatctatatggGAGGGTTACTTTGAAAAAACTATTCCCTTACAGAATACTAATagctttgttttgaaaatgatctGTGACTTAATCTCATATAATTCTCCAAATCAGTAAATTAATCAGATTGTCAGATTACTTtaggaatacattattttaatatctgttcTACTATTATTACAAGTTATTCTCAACATAAAATGAGACCATATgcatttctataaaaataacagtaaatgtgGAGTAATACTGAAACATTTActgtattacaaatattaataacaaaagaGAAGCACAGCAAAATCCAAGTCAATTAGAGTATGTGTTTTCTCTGGTGTCCTGTTTACGGGCTGGGAGTCTTCCTACAGTCAGAAGGAAAAGACTGCAGGACAATGTGAGTCAATCATCATTCTGTGATTAATGCAAGACTCTGTATGACTTCAATATGGAAGTTGGTGCAAAAGctctaattacattttagaaaatatgttCTTGTTAGAGTGAATATTCCAAAAGTATTCTCAAAGATAAGAGTCGAAGTACTCTGATTGAGTTACTATTGTATTGCACTGCATTACGTACAAAAAGGCTTTCAAATTTGtaattgaacacttcttcagAGTATCCCTCCCGGCACtataaatgtatcaatattaaaatatcattttcatttcacttaattgttacaatttacaaaaggAAGTCTGATACGATTATGGGCCATTATTAGctagaaggaaacaaaaatatatttattttggaaaataaggAAAGGACATATTTCGTACATTTAGAGAAGCACACAAATGTGATATTAAGTCATAATGGTGTCACTTACACACATCATGTGTCATTTACGAAGTGAAAGAAGAGAAATTCAAATCATTATAGTTTATGTGCTGTAAAGTTTAGAAGTGCATAAATGTAACAGACTACTTTCATCAAGTTTGATTAAGTCATGTTgctatacaatattataaatagtaAGCTATATCAAGTgtaaagataatttattttctataatgaaatgtatatatgtatttatttattattcacattacAGGCTTTGGTCCCCTATAGTTAAAATGTACACCATTATGACATTTCAGTCTTTCATACTGGTTTTCCAGCTGTAGAGAAGTATATGTACGTAATTGCACTGGAGGTATATTTTAGTGTAAGCATaaccaaattaaactgaaaacgTATTGTACCCTCATTTAAGTCACAGCTATTGTAAGTATTCCACAAACTGAATGTGGTCACAGTGatcttttgattttattatgtttgttttcttgtttgtgtttttaaaaaatagttaatgattacattattcaagaatatgaaatgaaacagacttgtaaacatatattttaaaatgttttaattttatattattattattattattattattattattattattgttattattattacagtctTCAGGAAGTGAACTTCATATTTTCAATAGGATGTTACACAAATTATGTTTCATGAGCAATTGCTGTGAAGCAAAGTGATTTGTTCATTTGAGAATAATTGTGTctttttttcaaattcagaaaAGGTACTGCAATTCCTGTGCAGGCATGACTAtgttcatgcattttttaaactaGCACCATCTAAAATGTGTATTGGTTTGAAGACTATAATTCAATTCTGAGAGAAAATAATTGAGTTATAATACACAGCAACTCAGtgtacagagaaaaaaacaggatgTCAGATTATCGACTTGAAGTGCAAACGCCACTTGATACACAGCTGGTTATAATTTGGTATAGTCCATAGATTTTGAAGTTCTTTATCAATTCTGCAACCCACTACTATTGATAAATTGACTATTCTGCTTTTGTCCTGGAACAGCAAGTACATTTCTGTTGTTTGAAGAGTAAACGCAGCTTCTGACTAGAATAGATAgctatttctatatatttctgtCTTTCAACACAGACAAACCATTATCTTTGTTTTCAGTATATATGCATAAATATTAAAGGATTATATTACTTCCCTTTCATgcgtatttattttatattctccATATGAAGGTGAGGGATAGCTTTCAAAGTATAATTAAAACCATACTTACCTTATTAAAACctattgtgatgtttttgaaCCCAAACAGCACCTTTAGatgtcaaaaaataataaataactacagTCCTTGGTCTTCTGTGAGGATGAGGTCTATAGGCATAATCTAAAAATAAGTGTATCTTAAATCAATACCTTTGGAATTTTAAGAAGTTTAAAATTTGGAGTTGCCTAGTAGATTTTGATGAGTAAAAGATTTGTCCCCTGTCtgattttctgtaattttgcacatttttcacattgaatttgGTCAGATATTTTTGTGGGTTGTAGTAGTATATAGAGTCAGAGCCATACTGCCCAAATGGAGACAGTTTGGGACAGTAGTAGATCTTCCCAGGAGTGGCTGTCCTGCCACGATTCTGCAAAAAATTGATCCCAAAGACACAAGCAGGTCTACATCAGAATGGTTGAAGAACAAGAAATGTAAGGatttggaatggcctagtcaaagtccAGACCTAATCCCCATCGAGATGTTGTGGCAGGACTTGAAATGAGTTCATGCTTGAAAAACCCATAGGTTTTCccagaggagtgggacaaaatgcCTCCACCACACTGTGAGAGACTAATCAATAAGTACAGGAAGCAGTCGGTTGCTGTTATTGCTGCTTAAGGTGGCGTAACCAGTTATTGAGTCTAAGGGGCAatttactttttcacacaggggAACTGGGTGTTGCATAACTTtctttactaaataaataagtatcaACATGTTGTCTTATTTGTTCTGGGTCCCTTTCATCTAATATTAGGTTTTGGTTGAAGATCTGATAACATTCAGTGTCACACATATGCACAAATGCAGACTATCAGAAAGggggcaaatactttttcacagcactgtatatgaaatgtatatattaaaagcatTGTGAAGCAAAAGTGAGTATCCAAACTGGGTAAACAAACAGCCAAACTACCGACCACCATCCCTAATGGTAGTCACCTTCAATTATTTGTACATATCACTTGCTTTAAAAACTGTGCAAACCCCTTATCTACATCTAATGTAAACAGCTGCAGGAGAAGTCACTTTTGCCTCACCAAATAGAAAATTATCTTTAACAAAAAAAGCCCATTAACAtagttttcaataaataaataaataaataaataaatacgacattattaatttcctttggAGTGTCTTGCTAAGTTGATCTGAAGCTGTTTTTAGCTTGTGGTGTGGAGCCCTCAACAGGTGTTACAGGTTAAAATCCATAGTAAAAGAGGTCTGAGTATTACTTTCAGGTGCAGATCGTATAGCTATAAAATCCCTGTGAAGAGCAACTTGGCCCTCTGACGTATACTAttctaaataaattatgaaataaaaaggttaattCCTATGACTCCGTGGCCGGCTCTGATAAGGTCTGGAGCAGGTTCTTGTAGACGGCAGAGTTCATGAATCGGGGGTATGAGTCTCTGTGCATTAAGGTGTAGATCTGAAGCTGTGCGTCATCAAACGTATGGGATGTTGGCTCAAGCATGTTCCTGTTAATCACTTCACGAACTCTGGAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42004 True 4315 lncRNA 0.33 2 17049997 17054332

Neighbor

gene id symbol gene type direction distance location
AMCG00019363 atp6v1h,LOC107686042,LOC107664082 coding downstream 43859 16987641 ~ 17006138 (-)
AMCG00019366 NA coding downstream 73027 16955890 ~ 16976970 (-)
AMCG00019360 NA coding downstream 150930 16891738 ~ 16899067 (-)
AMCG00019359 LOC107677137 coding downstream 206430 16791895 ~ 16843567 (-)
AMCG00019358 NA coding downstream 289556 16716365 ~ 16760441 (-)
AMCG00019364 tcea1 coding upstream 1640 17055972 ~ 17064681 (-)
AMCG00019362 lypla1,lypa1 coding upstream 14306 17068638 ~ 17075185 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding upstream 272259 17326591 ~ 17345515 (-)
AMCG00019380 NA coding upstream 359874 17414206 ~ 17421484 (-)
AMCG00019378 rs20,rps20 coding upstream 368336 17422668 ~ 17424664 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding downstream 251 17049514 ~ 17049746 (-)
G33531 NA non-coding downstream 5758 17044018 ~ 17044239 (-)
G33461 NA non-coding downstream 431306 16618302 ~ 16618691 (-)
G33419 NA non-coding downstream 738131 16272067 ~ 16311866 (-)
G33393 NA non-coding downstream 1118789 15858177 ~ 15931208 (-)
G33579 NA non-coding upstream 249126 17303458 ~ 17303696 (-)
G33584 NA non-coding upstream 259007 17313339 ~ 17315430 (-)
G33586 NA non-coding upstream 261216 17315548 ~ 17320145 (-)
G33603 NA non-coding upstream 270937 17325269 ~ 17326458 (-)
G33637 NA non-coding upstream 375974 17430306 ~ 17434591 (-)
G33381 ube2v2,LOC107732116 other downstream 1328545 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2058001 14951842 ~ 14991996 (-)
G33163 NA other downstream 2491707 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3384767 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 3861705 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 1330535 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 2240480 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2388063 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3689198 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5616315 22670647 ~ 22744182 (-)

Expression


Co-expression Network