G33586


Basic Information

Item Value
gene id G33586
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17315548 ~ 17320145 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42067
ttgtgttcagtatatatagaaaataaattatatttgtgtttatcaGAAATCAATCTACCTcttactataaataaataatgcatatttgtCCTTGTATTTGTCTCATATGAATCAACTGAGCAGAAGAGGCTGATAAAATGACCACAGTGtactttatttaatgaatttggTACCTTGtgttgcagtaaaataaaaaaaaaatgtacaaaaatccAAGATATACAAAATGTTAAGGTTCTTTTGTTTAGAGTTTAATTTTACAACAAAATTAAGTAaccaattaaatgtgtttttaagcaCAATTTCAGACTTTCATCACAAAATGCAACTTACTCAACAGACCAAAAATAACcatggtattttttttcttttttttgtttcttttttaatacatcACATACATCATACTAGTTTGATCTTTACTATATCATATGTCACTGCCGTTTTGAGGCAGCAGCCTCTAGTCAATAGACACCCTTCACAATCAGGACTCAGAAAGGAATGTTTTTAACATGGaaatttgcatacatttatatacagtaaaatatttttcaataactattttaatcttccattgcaaataaaataccaagtacatttgtacattatgtTTACACGTCAATCACAATTTAATGCCATTGTTCCCATTTGTTATTAGTTACTGTGCTTGTACTACTCACATGTGTATATCATAGCtgatatacattttctacattagGGTGCGTACTACTGctatacaaaactgaaaaataaagtctCAAGCAATTTACATAAGAATTTACAAGATTTCTAATATAAATATCTTGTATCCAGACTTTTTATCTCACCCTGAGCAAAATCATGATTATTTCTTCAGTCTCTTGCATCAAACTGAACTAATATGGTTAAGAACTGTAAAGATTATaagactaaaacaaacaagaaaaagatgCTTTGCTTTTTCCCAAAAATGCTTTGAatctttttaaaagtgttaaaattgAGTATTCAGGAGAAAAGTAAGgtgaaagtaaagtaaagtaaaagtaaagtgTTTGGCAGCTCCATTTTCAGGCCTTCGTGATTGACACAAAGGGAAAGCTGCTCATTTTGAATTCTGTGTGTGCAGACTGCATCACACCGCATGACACACACCCGCCTCCTACCGACATCATTACTTATgacctgctttattttttatccaaTCACACAGCTTCTCCATGCACTGCATGCACCAAATCAACTTTTATTTAGGCCAATTAAAGGGGACTGACACAAAAGCAACACAGTAATACTCCATAAGACTTTACAATCCATAGATTTCCATCTGAACCTGCTCCCATCTGCTCCCTTTTTATCTGgtaatggaaatgcaaatgttttttttcatccagTAAATTTGTCAAATtgtgtgtggactatagtataaacacagtaaccatcccaaaacacaatcaatattACTGAACAATTTCACACTAGAAAAACTGAGAAATCTATTGACTTGCTCTGTTCCACATAGCATTTACCATGCCATCAGGGATACTTTAAGgaaattaaagtgtttacaAGACAGAAGAGAGACAAGAGCATAAAAGTCTTTTTAAGgcaaaataaacagatataaGCAGCTTATTGTAACAACAAGATTGCATGATTCTCTCTAACCAAGAAGTGATCTTGTCCTTAAGTGCAGGTTTCCtggttttttatttagtttttggatGCACTAATAGCAACAAACAAGATACCCTCCACCCTAATAGTACCGTTAACCTTATTTCTATAATCTCTATGTAAGTTTCTTCACATTTAGTACCGTTCAATCATTGTTGCATTGGAAACTGATAACCACATATTTATGGAAAACATCCAGCTAAAGCAGAGTTTTAATGGTAGGATGGAGGGTATTCTGTTTCTACAAACCAAGTTGAGGTAgttaaatgtataacatattgtattaaactttcttttaaacaatgcaataaaaaacagaaaatgaaatgtaacaagAATGTGCACTCCATTTCTATTGATATAGAAACTAGTTTGAGAAATGAAGTGGAAGGAACTGAGAGcttaaaaaaggtaaaagagGAGTGATTTTCATTTTGCTAAAATCTCTTGAGTGTAAGTTTAACAATACACCTGTGATCCCTTAAAGAAAGGTTTATACGTTTGCATTCTCACAGTTGGTATTATTCGCTCACAGCTCCAAGTACTATTGAAGGTGGAACTCAAGTTTGGTGGGTTTACATTAAATTACCTATTTTGATATCATCCTTTGAAACTTACATCTCTTAATTTGACTCCAACACAGTTTTTTTCATACAGCTGTGCTTACTAATATAATGGTAACTTACaagaggttttgttttcattttacatttccattgcCTCATATTTTTCTTGGAAAGGGTCAGAATCGGTATGTCTGacattttacacaatattacacaatATTGGGCTGGCTTGAAATGATTTGAGCTCTTAAGATGGATGGAGTGATTTAGCTTTGACTGTTTTTGGTAGTAGCATCGATCAAGCCATGTGGTACAACGTGTAAATGCAACTGTATGTATCAGTCCTTAGTTCAGGCCTACAAGCCCATTTATCCTTTATTAGCATTATTGGGAGATGTGATACTGAACGAATGAAGTGTGGTCAAACCCACAGCTTAGAGCTGCTTATAATTACATTACCTAGCTGGTAATTTAAACATACACAGGACTTCAGCAGTCTCGTGTGGCAGACTCAGGCAGATACAATGCATAACCACTTATTTTCTCTGTTTCAGATCATTCTTACCAAAAAAAGTGAATCAATTTTTTTACCAAACAATAAATGTtcatatatgtaaaaaaaagaaaaaagaaaaaagaaacaataaaacaaaatagcatgTTCTATGCAGAAAGTAACTTTCTTTTCCTGTTGGCTTATATGTTTCATTATAGTGATATTTTCTGAACACATCATTGCAAATGTctaacacatatatttatattactctCCATTTCATAACAGACACTCTATATGCAGTGTAGTACGCAAGTTGCCTTATGATCGGTCCTGTAAATTGACACACTCTCATTAtccatttaaaaggaaattataagtgtatacattttgtatttctagtGTATATGGcattaaagaaacataaaaaagggaaacacacacacacacacacacacacacacacacacacacacacacaaacatacatcttATGACCTGATCTGGCAGTGtggttgattattattaaaataacaaaaacccAAGCCCTTTTAAATTAGGTAAAACCATATTTTGCATGACAGAATGTTGTATTGGTTAACAAATTCAGGAATATGAGGGGCTTTGATATGCTAGGAATGTCATCAGAATATTTATTAGTATAGgaaaacagtattaaacaagTACCTGGCATTacatcacaaaaaatataacCCTGTATGTcataatatagttttaaaaatgcttatGCATATGAGCAATGGTTTAATTTGTGAGCTCTTACTAAGGGTTTTACAATTATTTGGTTATCTAGTAATCAAAATGCCATTTGGGGTATTTGTGTTAATGATGAGTTGTTCCcagctgcttttttttcctttgccagACAATGTGATTACTAGTTCAAAGACATGCAATATCCCTTCCCCATAGTTCACTGTCTCGGGCAATTTTAGCACCTGATTTTGGTAATATATACCTAATCTAATATACTCTTGCCTCCAACTGTATTttggacagaaaataaaatctgatttgGCAAATAAACTGCAGATGTACATTCACTATTCTTCACCATATGTAAACAAAATCCATGACTATCAGAACCCTAATACCAATAGCACATTTGTCAATAGACATGATATGAATagcatattgtttaaaaaagtgttacgtatatttctaaatacacaatattcaCAGATATTCACATAATGGCAATTACTATTTTGTGGATTCTCCTTTGGCTTTATGAACCTTGAGAAGGCACTTCCTTTAGTCTTTAATAGGATCAGGCACTTCTCGGGAGGGATTCTCCACCACTCCCACTGGTTTAAGATCTCGGGGCTCCTACGAGTTGCACTGCTTGTGCTTGTGAACAGCTTTCTTGTTTTCCTATCACAGATGTTctttggattgaggtctggatAGCCAATCAAGAgtcaattttatattattttaaacatcttaTTGAAGCATAGTTGTTAATGTGTATTTCCAATTATTGGAAAGTATATTTTGGACAGGGGGATCAACTTATTTTGGTTAAATTATGCTGGTATACTATAGTCAATGCATCAATCTATCCACAACTAACATGGACACCAGGACTAGAGGATACATCACACCTGACAACAAAACATGACTCCAGTGGACTTGGGAGTGATTCAGACTTCACTATTTATGTTGTCACTGGACAGTCTTCTTCGGTGGAACTCTGCCATGGAAACTAAATTCACACAGGTGGCAGTGAATGATAATCTTGGAGACTTTTTGTTCTCTTCCTTTTACATAAAAGGCAATTGGCAATGAAGGTGACTTCCAAAAGCTTCTGTTATCTTCCAGATTTTGTGCGCAGGATAACATTTACAGAATTTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU42067 True 4598 lncRNA 0.33 1 17315548 17320145

Neighbor

gene id symbol gene type direction distance location
AMCG00019362 lypla1,lypa1 coding downstream 240363 17068638 ~ 17075185 (-)
AMCG00019364 tcea1 coding downstream 250867 17055972 ~ 17064681 (-)
AMCG00019363 atp6v1h,LOC107686042,LOC107664082 coding downstream 309410 16987641 ~ 17006138 (-)
AMCG00019366 NA coding downstream 338578 16955890 ~ 16976970 (-)
AMCG00019360 NA coding downstream 416481 16891738 ~ 16899067 (-)
AMCG00019372 tmem68,LOC106569251,LOC107577454,LOC104952032 coding upstream 6446 17326591 ~ 17345515 (-)
AMCG00019380 NA coding upstream 94061 17414206 ~ 17421484 (-)
AMCG00019378 rs20,rps20 coding upstream 102523 17422668 ~ 17424664 (-)
AMCG00019381 NA coding upstream 118043 17438188 ~ 17440320 (-)
AMCG00019379 sdr16c5,LOC106599159,LOC105008851 coding upstream 139619 17459764 ~ 17477757 (-)
G33584 NA non-coding downstream 118 17313339 ~ 17315430 (-)
G33579 NA non-coding downstream 11852 17303458 ~ 17303696 (-)
G33533 NA non-coding downstream 261216 17049997 ~ 17054332 (-)
G33532 rgs19,rgs20,LOC103135694 non-coding downstream 265802 17049514 ~ 17049746 (-)
G33531 NA non-coding downstream 271309 17044018 ~ 17044239 (-)
G33603 NA non-coding upstream 5124 17325269 ~ 17326458 (-)
G33637 NA non-coding upstream 110161 17430306 ~ 17434591 (-)
G33665 NA non-coding upstream 303815 17623960 ~ 17624226 (-)
G33686 NA non-coding upstream 423017 17743162 ~ 17773325 (-)
G33758 rab2a non-coding upstream 858944 18179089 ~ 18198157 (-)
G33381 ube2v2,LOC107732116 other downstream 1594096 15692482 ~ 15721452 (-)
G33259 garem1,LOC107659447,LOC107598699,LOC107684519,LOC107724394 other downstream 2323552 14951842 ~ 14991996 (-)
G33163 NA other downstream 2757258 14491891 ~ 14558290 (-)
G33106 psma8,LOC100304914,LOC102789190,LOC103029839,LOC107572146,LOC101062730 other downstream 3650318 13662116 ~ 13665230 (-)
AMCG00019312 NA other downstream 4127256 13168436 ~ 13188292 (-)
AMCG00019396 NA other upstream 1064722 18384867 ~ 18441981 (-)
AMCG00019417 NA other upstream 1974667 19294812 ~ 19301547 (-)
AMCG00019419 cpa6,LOC106579545 other upstream 2122250 19442395 ~ 19454969 (-)
AMCG00019446 ube2w other upstream 3423385 20743530 ~ 20765496 (-)
AMCG00019487 NA other upstream 5350502 22670647 ~ 22744182 (-)

Expression


Co-expression Network