G33615


Basic Information

Item Value
gene id G33615
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 17422624 ~ 17424898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42100
GTATGGGATTGGGGGGgggttgaaaaaaaataaagcacaagcacttttctcttttcaaacTTTTATTAGTTGCATTTATGCGTCTGCGATGGTGACCTCCACCTCCACACCAGGCTCGATGCTGATGGAAGTGATCTGCTTGACGATCTCGGAGGGGCTGTGCAGATCGATCAGGCGCTTGTGGATGCGCATCTGGAAGCGATCCCAGGTCTTGGATCCCTCACCGCAAGGAGTCTTCCTGGTTGTGATGCGCAGAGTCTAAAGCCTTGGTTGGCATCCGCACCGGCCCCTTGACCTTCAGGTTCTTCTCCTTGGCACCACGGATGAGGTCAGCACACACTTCTCCAGAGACTTGACATTGCGGCTGGTCAGAGTGATCCTGATGCGATGGATGGCAACCTCAGCATCCACAGGGGCCTTGCCGGTGTCCTTAAATGCCGTTTCAATGTTCCTGACCGACTTATTCGTGTAACAAAAATTCAGGCGAACAGCGGTGAGCCAGGAAGCAAAATGCTGTAACTCTCGTCACTGGAGCTGGTTGAAAGGACGGAACTGCGGCCCGCGATGCCTTTTATATGGAACATACGGGTCCTGTGCGACCTCTGACCCTAAGCAAATTGAACCAATTAGATCGCAGTGACGTATGACAGTCTCTCATCCCAGAGTTCAAACCACATCTGAATGTGATCGTTGTAATGATTGGAAATCTGGATTCTTATTCAAACCATGTAATTTATGTGACCAAAACAT
>TU42102
GTATGGGATTGGGGGGgggttgaaaaaaaataaagcacaagcacttttctcttttcaaacTTTTATTAGTTGCATTTATGCGTCTGCGATGGTGACCTCCACCTCCACACCAGGCTCGATGCTGATGGAAGTGATCTGCTTGACGATCTCGGAGGGGCTGTGCAGATCGATCAGGCGCTTGTGGATGCGCATCTGGAAGCGATCCCAGGTCTTGGATCCCTCACCGCAAGGAGTCTTCCTGGTTGTGATGCGCAGAGTCTAAAGCCGGGAAACACAAGAGTCAGTCATTCACCAGAATCCTAACGAGGGATTTTTGGATATTAAGAGCATACCAAATTAAAATACTCAGAAGTGGCTGAACTGTCTAAAGCCGTAAAGATACTAATGAAACTTGACATTAGGTATAATAAACATTAGGGTAAGGGACCACAAATAACTTTGATGTAGGTTTCGTTTATGCAGCAGGTATGGtttccatttcctgtttctcAAATTGTTTTAGAACTACATGAAGCACTAATCCCGAGCCCCCGAAATGCACTTCCTGGCATCTTTTCTGTCCATGTGCCTTGAGGGGTCTCGTCAAAACTACCTTTGCTGGGACAGTTAGAATGACAAATATAATCCACAGCTGCATATGCAGGACAGTTATCAGCCTATTTAGAACTAGTGTCAGAAGACTGGGGCTGATTAAACAGAAATGGACAGAAATAGAAGAGTCAAGGTCAGTTTTGTGGTGTGAAGTAGTAATACAAACATCAACGAATAAGAGAATAGGAGTACAAGTGTATCGTCCAGGTTTCCAATAATACAAAGGATACACGTTCAGGGTGTCTGATCAACGTCAAGTTAAAAACGAAACCCATTGGAGGCAGCCCAATCATTTCAGTGTTTCCCCAACACACAATGCAAAAGGCACTTGGCAAACTCACCTTGGTTGGCATCCGCACCGGCCCCTTGACCTTCAGGTTCTTCTCCTTGGCACCACGGATGAGGTCAGCACACACTTCTCCAGAGACTTGACATTGCGGCTGGTCAGAGTGATCCTGATGCGATGGATGGCAACCTCAGCATCCACAGGGGCCTTGCCGGTGTCCTTAAATGCCTGCAAAACGGAACATGAAGCCGGATGAAGAAGCGCACACAAACCAGCCTGATTTTCACTTATTTAAAGTTATGCCTTGGGAGGTGCGAGATGACTCCATACTGgcggattaaatacaacttgtGTTCGGTAAAGTATTTCTGCATCAGGGATAAAACAAATcctgtatgtatacattatatatacatacatacacactaatatatatatatagtactagATGTCTCGATTATTACAATCATACATGCCATTTCTGTTCGCAGTGTAGCTAACATTACTTAATACACACTTAACCTTCTCTAAATCCGATATAAATACGTTTTCCTCTTCCAATCGCTTGCACCGATTTTCACCCTCTACATACATTTAAGAGCGAATTCATCCGATCCTCTCCTGCAGCACAGGGACTGTCCTGAGGCGGGCAGCGGCTGCACTCAACACGTGTATTGACGCAGGCCTCGGTCACATCTCCGCACGGAAACAGAAACCACACCACACGGGTCTTTAGACAGGACAATTAGACACCCAAACGCAAGCAAGCTTACCATGTTTCAATGTTCCTGACCGACTTATTCGTGTAACAAAAATTCAGGCGAACAGCGGTGAGCCAGGAAGCAAAATGCTGTAACTCTCGTCACTGGAGCTGGTTGAAAGGACGGAACTGCGGCCCGCGATGCCTTTTATATGGAACATACGGGTCCTGTGCGACCTCTGACCCTAAGCAAATTGAACCAATTAGATCGCAGTGACGTATGACAGTCTCTCATCCCAGAGTTCAAACCACATCTGAATGTGATCGTTGTAATGATTGGAAATCTGGATTCTTATTCAAACCATGTAATTTATGTGACCAAAACAT
>TU42111
GTATGGGATTGGGGGGgggttgaaaaaaaataaagcacaagcacttttctcttttcaaacTTTTATTAGTTGCATTTATGCGTCTGCGATGGTGACCTCCACCTCCACACCAGGCTCGATGCTGATGGAAGTGATCTGCTTGACGATCTCGGAGGGGCTGTGCAGATCGATCAGGCGCTTGTGGATGCGCATCTGGAAGCGATCCCAGGTCTTGGATCCCTCACCGCAAGGAGTCTTCCTGGTTGTGATGCGCAGAGTTTGGTTGGCATCCGCACCGGCCCCTTGACCTTCAGGTTCTTCTCCTTGGCACCACGGATGAGGTCAGCACACACTAGTGAGGGGAGGAACAAATAAGTGGACTTGTGCACAAGTGATTTGAATTTCAAGGAGAAAAATGAAGCAGTATGGCTCAGAATAGCGTATGAATGAATCATTGTTTATCATTCTTAAGGGTCATCCTCATAGCCAGAACCTGAATTTCTACACCTACCATTTAACAGAACTACACATTTAACTATGCAGGACAAGGGCTTATTTTAGACTACTCAGGTAACAAAATGTGCTCCTTATAACCTGATCAACTAATTGTAGATTTGCTTTCCTCAAACGACATTTAAAGCAGGCATGGCCACTTGGCTTACCCTTCTCCAGAGACTTGACATTGCGGCTGGTCAGAGTGATCCTGATGCGATGGATGGCAACCTCAGCATCCACAGGGGCCTTGCCGGTGTCCTTAAATGCATGTTTCAATGTTCCTGACCGACTTATTCGTGTAACAAAAATTCAGGCGAACAGCGGTGAGCCAGGAAGCAAAATGCTGTAACTCTCGTCACTGGAGCTGGTTGAAAGGACGGAACTGCGGCCCGCGATGCCTTTTATATGGAACATACGGGTCCTGTGCGACCTCTGACCCTAAGCAAATTGAACCAATTAGATCGCAGTGACGTATGACAGTCTCTCATCCCAGAGTTCAAACCACATCTGAATGTGATCGTTGTAATGATTGGAAATCTGGATTCTTATTCAAACCATGTAATTTATGTGACCAAAACAT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU42100 False 750 lncRNA 0.50 4 17422624 17424898
TU42102 True 1964 lncRNA 0.45 2 17422624 17424898
TU42111 False 1054 lncRNA 0.46 3 17422624 17424898

Neighbor

gene id symbol gene type direction distance location
AMCG00019375 lyn,LOC107728263,LOC108432264,LOC103026730 coding upstream 6927 17385850 ~ 17415697 (+)
AMCG00019371 NA coding upstream 52042 17345622 ~ 17370582 (+)
AMCG00019373 xkr4,LOC106569249 coding upstream 118758 17298706 ~ 17303866 (+)
AMCG00019374 xkr4,zgc:123035,LOC107679338,LOC107728991,LOC107714844,LOC107674319,LOC107567404 coding upstream 206080 17215654 ~ 17216544 (+)
AMCG00019370 NA coding upstream 208213 17154870 ~ 17214411 (+)
AMCG00019382 NA coding downstream 203494 17628392 ~ 17636437 (+)
AMCG00019388 fam110b,LOC107589885,LOC105031585,LOC108247726 coding downstream 282632 17707530 ~ 17708615 (+)
AMCG00019387 NA coding downstream 299525 17724423 ~ 17738652 (+)
AMCG00019385 LOC108412264,LOC105893799,LOC107718110,LOC107693703,LOC107722516,LOC107691428 coding downstream 335175 17760073 ~ 17764666 (+)
AMCG00019384 NA coding downstream 358436 17783334 ~ 17793587 (+)
G33585 NA non-coding upstream 102589 17315673 ~ 17320035 (+)
G33521 NA non-coding upstream 364404 17057586 ~ 17058220 (+)
G33474 NA non-coding upstream 621697 16798149 ~ 16800927 (+)
G33448 NA non-coding upstream 918548 16496841 ~ 16504076 (+)
G33444 NA non-coding upstream 931571 16488871 ~ 16491053 (+)
G33634 NA non-coding downstream 6055 17430953 ~ 17432628 (+)
G33750 NA non-coding downstream 718598 18143496 ~ 18144704 (+)
G33794 NA non-coding downstream 959986 18384884 ~ 18389982 (+)
G33795 NA non-coding downstream 970503 18395401 ~ 18395619 (+)
G33796 NA non-coding downstream 974118 18399016 ~ 18399743 (+)
G33406 NA other upstream 1340681 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 1795669 15554819 ~ 15626955 (+)
G33283 NA other upstream 2252783 15164348 ~ 15169841 (+)
G33159 LOC103376870 other upstream 2935918 14439253 ~ 14486706 (+)
G32539 NA other upstream 7013127 10404639 ~ 10409497 (+)
AMCG00019376 NA other downstream 24422 17449320 ~ 17452659 (+)
AMCG00019402 NA other downstream 1580126 19005024 ~ 19021412 (+)
AMCG00019415 NA other downstream 1860638 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 2026349 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 3182576 20607474 ~ 20610889 (+)

Expression


Co-expression Network