G33913


Basic Information

Item Value
gene id G33913
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 19207194 ~ 19209710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU42459
cagaTGGATACAGAGCTATCAAGAGAAGGCCTTCGATATTTGATAAAGATGAGTCGTCAGAAAGCCTCAGAAGCTCATTAAAGCGCAGCTCAGTCCAGGAGCCGGCCGCAGATGTCCCTGCTCCGTCTGAAGGACACTGCCTGAAGTCACCGAGCTGTAGGAAGGAGGGCCTTTTTCTGGCAGTGGGGCCTGAGGCCTCGTTGCCCCTTACAGAGAGCGTTTCCCACAGCTCCCCCAGCCTTCTGCAAAAGATCCTCCTGAAGCATAAGAAGAAGGGACCGTACCAGGGGGCCACAAACAGCGCGTTTGAACCCGACTGAGGGACGTGCGTCAGGAAGTCGAGCACGAAGTCGTATGCAATTGCGTTGATCAGATACGTGTAGCAGGAAGTGAAGTAGttcttattttaagtactgACTGAATTCAACACATACGTACTGCTGCTGTCAGGTAGTCATTGCCCTGCACACAGACTATATAACCTCCTGGCAGTCCATATAGGCCGTACTGCAGGGGCACAGCCCACtaactttatatatatgtatctgtatctgtatctcaAAGATTAAGCTAACAGGGAAACATGTTCATAACACAGTTTTATGCTGTAATACATGGCACATAGAAACACAAGAAGTGTGTTTTAGGCAAATTACTTAATGGTCATTTGAACACAGATAAAAGCTTCaaaatatcatcatcagcctaaatatttgcattacatATGTCTGTGTTGGCTCAGTTCAGGTCTCTCAGTTTCCTAGTTGGCCCATTATGTGACTAGGATATATTTTCCCTTCATTCTGTTAAAATTCTGTGGCtgatggtatttaaaaaaaataaggaaaagaaGTTTGCCAACGATTAATATCTCATTatgtgatgaaaaacaaaattaattggtTGATATAAAATTACTACAATTGTGatcaatacattcataataagtaaagtgttttttatgtttacgCATTTGGCTTTATTACATTTGTGATACTGTTAATGTATGCAATGGCCATATAtcttgtactttatttattttaatgtatgtaagacatttttatttgaaatgtaataataaag

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU42459 True 1083 lncRNA 0.40 3 19207194 19209710

Neighbor

gene id symbol gene type direction distance location
AMCG00019407 adhfe1,LOC101480322 coding upstream 5516 19191577 ~ 19201678 (+)
AMCG00019411 rrs1,LOC106579528,LOC107590198 coding upstream 16881 19189279 ~ 19190313 (+)
AMCG00019406 trim55b,LOC107586797,LOC107705202,LOC107663638,LOC107656154,LOC107590338,LOC107721936 coding upstream 87685 19096736 ~ 19119509 (+)
AMCG00019408 dnajc5b,LOC107656153,LOC107586796,LOC107721861,LOC107663636 coding upstream 118073 19081719 ~ 19089121 (+)
AMCG00019401 bhlhe22 coding upstream 395502 18810880 ~ 18811692 (+)
AMCG00019413 sgk3,LOC107666631,LOC106579527 coding downstream 60099 19269809 ~ 19283732 (+)
AMCG00019414 NA coding downstream 130536 19340246 ~ 19366528 (+)
AMCG00019427 prex2,LOC107686687 coding downstream 327124 19536834 ~ 19601640 (+)
AMCG00019423 prex2,LOC107566194,LOC107741010,LOC107686687,LOC107758281 coding downstream 405206 19614916 ~ 19625804 (+)
AMCG00019424 cunh8orf34,zgc:162928,LOC105890107,LOC107741009,LOC107686688,LOC107566197,LOC107758299 coding downstream 452664 19662374 ~ 19665136 (+)
G33874 NA non-coding upstream 279907 18927047 ~ 18927287 (+)
G33812 NA non-coding upstream 623490 18576495 ~ 18583704 (+)
G33810 NA non-coding upstream 755791 18451133 ~ 18451403 (+)
G33809 NA non-coding upstream 756353 18450617 ~ 18450841 (+)
G33800 NA non-coding upstream 768929 18431364 ~ 18438265 (+)
G34084 NA non-coding downstream 861626 20071336 ~ 20071564 (+)
G34086 NA non-coding downstream 865468 20075178 ~ 20078454 (+)
G34093 NA non-coding downstream 885608 20095318 ~ 20096450 (+)
G34183 NA non-coding downstream 1423367 20633077 ~ 20635272 (+)
G34192 NA non-coding downstream 1463277 20672987 ~ 20746971 (+)
AMCG00019402 NA other upstream 185782 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 1754535 17449320 ~ 17452659 (+)
G33406 NA other upstream 3125251 16043942 ~ 16081943 (+)
AMCG00019345 NA other upstream 3580239 15554819 ~ 15626955 (+)
G33283 NA other upstream 4037353 15164348 ~ 15169841 (+)
AMCG00019415 NA other downstream 75826 19285536 ~ 19294208 (+)
AMCG00019428 LOC107595150 other downstream 241537 19451247 ~ 19455137 (+)
G34170 rpl7 other downstream 1397764 20607474 ~ 20610889 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 3405913 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 3976106 23185816 ~ 23204250 (+)

Expression


Co-expression Network