G34378


Basic Information

Item Value
gene id G34378
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22575974 ~ 22577472 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43038
GAGCATTTAACATTTGTCATGTAATTAGGGTGTCATTATACTTAATTTATGTTCATTCGTACAGCCTGATTGTCTcatgacaaaacacattcaggaatatatagggatacaaaaataagacaGAAATAATCACACACTGAAATATCCAGTTCAAGCAGCAAGGCGGTTTTCACTGCATCCTCTCGAGACAGCTGTACGGCTCTGGTAACCGGCACTTGGTGTTCAGCTTCTTGATCGGGTGGAATAAAATTTTTCTTTGGTCGTCGTGTTCATTAATTCTACGTGTATGTACTGAGGCGGCAGAGCAGGAATATTAAGTGTGGATTCTGACAGGGGTGAAATGGATGTCGTCAGAGAGGCCCCCAAGGGTGTGGTCTCAGTGCCTGACTTTCCTTTATCAAGGCTCGGCTCAGGAAGATCTGGACTCAAATCGTTTGAGTCATTTATCCTCAGGAGCTGGATTTTCAAGTCAGCAACTTGTTTGTTATCAGCACTTTCAGCAGGCTCCCCATTCTGACCTGTCCTGGCACGGTCATTACGCTCTTGGTTTGGATCAGACATATTTGAATAGGCTTTTCTTATTGCCTCCCACAGTCCCTCAATCCACGGATCGACTACCAGCTCTAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43038 True 629 lncRNA 0.44 2 22575974 22577472

Neighbor

gene id symbol gene type direction distance location
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 121445 22390170 ~ 22454529 (+)
AMCG00019466 fam173b,LOC105900597,LOC106599314,LOC108440663 coding upstream 270325 22298873 ~ 22305649 (+)
AMCG00019465 LOC105921547 coding upstream 291615 22270509 ~ 22284359 (+)
AMCG00019468 NA coding upstream 327292 22226347 ~ 22248682 (+)
AMCG00019467 LOC107549185,LOC107662560 coding upstream 365518 22204665 ~ 22210456 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding downstream 5288 22582760 ~ 22588134 (+)
AMCG00019478 ropn1l coding downstream 66796 22644268 ~ 22656909 (+)
AMCG00019479 NA coding downstream 92939 22670411 ~ 22688277 (+)
AMCG00019477 NA coding downstream 116220 22693692 ~ 22702036 (+)
AMCG00019488 NA coding downstream 989109 23566581 ~ 23575527 (+)
G34278 NA non-coding upstream 1114083 21461682 ~ 21461891 (+)
G34235 NA non-coding upstream 1485558 21090144 ~ 21090416 (+)
G34204 NA non-coding upstream 1799358 20771526 ~ 20776616 (+)
G34192 NA non-coding upstream 1829003 20672987 ~ 20746971 (+)
G34183 NA non-coding upstream 1940702 20633077 ~ 20635272 (+)
G34432 LOC107584984,LOC108256437,LOC107701635 non-coding downstream 202759 22780231 ~ 22783116 (+)
G34433 NA non-coding downstream 211536 22789008 ~ 22789463 (+)
G34435 NA non-coding downstream 221928 22799400 ~ 22799718 (+)
G34436 LOC107686039,LOC107746909 non-coding downstream 240671 22818143 ~ 22818460 (+)
G34438 NA non-coding downstream 303708 22881180 ~ 22888739 (+)
G34170 rpl7 other upstream 1965085 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3120837 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3281766 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3554562 19005024 ~ 19021412 (+)
AMCG00019376 NA other upstream 5123315 17449320 ~ 17452659 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other downstream 38151 22615623 ~ 22643226 (+)
AMCG00019481 NA other downstream 608344 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 655798 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 1094653 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1468217 24045689 ~ 24086481 (+)

Expression


Co-expression Network