G34446


Basic Information

Item Value
gene id G34446
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 22963457 ~ 22963998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43120
CCTGGCCTCTGGAGAGTGGCCGTGGCGTAGAGGTCGTGGGAGTGCTTGTACTGATCCGAGGTGTGCACCAGACGCTTCGTTGGAGACAGCGTGGCGTAGTTGCCAACAGTGGAGCTGATCTGATGGATGGGAGAGGAAGTGGACAGGCCAGCTTGGACGTTAGGCGGAGAGGCGACCCGGAGGGGTGATGAAGAGAGCCCCGATGAGGACACCACGATGTTGATGGGAGAGCTGGTGCTGTAAGACTTGGCCAGCCGGCTGGGAGACTGCTTGGGCGAGGAGACCCTCTGAGTGGTGGCGTAGCCGGAGTTTTCCGAAGCCGAGCCCACGCGCTGCAGCTTAGTGGGTGAGCCCACCTGCTGCATGGACAGGGGTGAGCTCACGCGCTGTGCCGGCAGGGTGGAGCTGGAGTAATAGATGGAGGGGGTGTGCTGAGAGTCGGGCAGGTGGAAGGCGCTTCCATGACTCGGCACGAAGGACTCTCTTGACTGAGACTGGGAGGGCTCGGCGGCGGCCAGCTGGGCCGCACGGTTTGATGTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43120 True 542 lncRNA 0.63 1 22963457 22963998

Neighbor

gene id symbol gene type direction distance location
AMCG00019477 NA coding upstream 261421 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 275180 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 306548 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 375323 22582760 ~ 22588134 (+)
AMCG00019469 sema5a,LOC108426609,LOC106578437 coding upstream 508928 22390170 ~ 22454529 (+)
AMCG00019488 NA coding downstream 602583 23566581 ~ 23575527 (+)
AMCG00019494 NA coding downstream 1131297 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 1144964 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 1189499 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 1216197 24180195 ~ 24182210 (+)
G34445 LOC107590286,LOC107591257,LOC107701635,LOC108438556 non-coding upstream 34147 22929020 ~ 22929310 (+)
G34438 NA non-coding upstream 74718 22881180 ~ 22888739 (+)
G34436 LOC107686039,LOC107746909 non-coding upstream 144997 22818143 ~ 22818460 (+)
G34435 NA non-coding upstream 163739 22799400 ~ 22799718 (+)
G34433 NA non-coding upstream 173994 22789008 ~ 22789463 (+)
G34457 NA non-coding downstream 246257 23210255 ~ 23286978 (+)
G34509 zfhx4,LOC107705239,LOC107666618,LOC107586695 non-coding downstream 690429 23654427 ~ 23654645 (+)
G34510 zfhx4,LOC107586695 non-coding downstream 706584 23670582 ~ 23671043 (+)
G34581 NA non-coding downstream 1181141 24145139 ~ 24145909 (+)
G34621 NA non-coding downstream 1275418 24239416 ~ 24239813 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 320231 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 2352568 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 3508320 19451247 ~ 19455137 (+)
AMCG00019415 NA other upstream 3669249 19285536 ~ 19294208 (+)
AMCG00019402 NA other upstream 3942045 19005024 ~ 19021412 (+)
AMCG00019481 NA other downstream 221818 23185816 ~ 23204250 (+)
AMCG00019480 NA other downstream 269272 23233270 ~ 23248099 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 708127 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 1081691 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 1251879 24215877 ~ 24219991 (+)

Expression


Co-expression Network