G34509 (zfhx4,LOC107705239,LOC107666618,LOC107586695)



Basic Information


Item Value
gene id G34509
gene name zfhx4,LOC107705239,LOC107666618,LOC107586695
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23654427 ~ 23654645 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU43191
CTCGTTCGGAGGGCAGTCTTTGACGAAGAAAAGTTCACTCAGGTTGTCCTCCTCTACCGCCAGCCCCTGCTGGTGTAGCTGGAGCTTACGTAGTCCCTCGGTCTGCTGGTGTTTCACGGAGCGGATGTGCTGCACCAGGTTCAGTTTGGCTTTGGTCGAGTAGTCACAAAGGGCGCAGTAGTAGTAGCAAGACTCAGAGTTCACtgcactttcttgttt

Function


symbol description
zfhx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; midbrain neural keel; pharyngeal arch; and retinal ganglion cell layer. Orthologous to human ZFHX4 (zinc finger homeobox 4).

NR:

description
zinc finger homeobox protein 4 isoform X1

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU43191 True 219 lncRNA 0.53 1 23654427 23654645

Neighbor


gene id symbol gene type direction distance location
AMCG00019488 NA coding upstream 78900 23566581 ~ 23575527 (+)
AMCG00019477 NA coding upstream 952391 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 966150 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 997518 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 1066293 22582760 ~ 22588134 (+)
AMCG00019494 NA coding downstream 440650 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 454317 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 498852 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 525550 24180195 ~ 24182210 (+)
AMCG00019498 NA coding downstream 531027 24185672 ~ 24191616 (+)
G34457 NA non-coding upstream 367449 23210255 ~ 23286978 (+)
G34446 NA non-coding upstream 690429 22963457 ~ 22963998 (+)
G34445 LOC107590286,LOC107591257,LOC107701635,LOC108438556 non-coding upstream 725117 22929020 ~ 22929310 (+)
G34438 NA non-coding upstream 765688 22881180 ~ 22888739 (+)
G34436 LOC107686039,LOC107746909 non-coding upstream 835967 22818143 ~ 22818460 (+)
G34510 zfhx4,LOC107586695 non-coding downstream 15937 23670582 ~ 23671043 (+)
G34581 NA non-coding downstream 490494 24145139 ~ 24145909 (+)
G34621 NA non-coding downstream 584771 24239416 ~ 24239813 (+)
G34632 NA non-coding downstream 672795 24327440 ~ 24328019 (+)
G34695 NA non-coding downstream 1447744 25102389 ~ 25103872 (+)
AMCG00019480 NA other upstream 406328 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 450177 23185816 ~ 23204250 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1011201 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 3043538 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 4199290 19451247 ~ 19455137 (+)
G34511 zfhx4,LOC107590192,LOC107721891 other downstream 17480 23672125 ~ 23695801 (+)
AMCG00019492 NA other downstream 391044 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 561232 24215877 ~ 24219991 (+)
AMCG00019535 NA other downstream 4958610 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 5646310 29300955 ~ 29305006 (+)

Expression



Co-expression Network