G34511 (zfhx4,LOC107590192,LOC107721891)


Basic Information

Item Value
gene id G34511
gene name zfhx4,LOC107590192,LOC107721891
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 23672125 ~ 23695801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43194
AGTCCAGGAGCCAGGGCCGCGGCAGTAGTGGGGTCAAGCTGGAAAGGGTTAATCATCATCTGAGGGTCAGCTGGGTTTTCCAGTTTCATGCCGGTCAGGCCTATGTTCTGGGCCAGGTAGTACTGATAGAGCTCGGCCTCAGCAGGGGCCAGGCCTAAGTGCAGGTTGTGCTGGATCTGCTTCATGTTCTGCTGCAGGAGCATCATGTTGTGCATGTGTTTCTCACTGGTCATGTGGATGCGCAGGTTGCGGGCCACGTTGGTCTCGTAGTCGCATACCTCGCAGCGCCAGGTCggcttttgttttggtttggagGGGGAGGGCGTCCCGCAAGCACTCAGGCTGGCCGTGGAGACGGGAACCGTGTGGTTAAACACCGGCTCAGCTCCGCCATTCTGCAGATTTTGGACGTTGTTTAGGTGCTTGTCGGACTGCATATGAATACTGAGGTTGCCTTTGGTAGTTGTTGAGTAGTTACACACCTCGCAGCGGAAGGGTTTGTAGCCACAAGTATAACTTTCACCTCTGGCGAGCCGAGGATGGGGCTGGCCTGTCCTACAGTAGGCGCAGGATCCACCAGACTCGGGGTGCTTTTCCTTCATGTGAGCGTCGAGAGTCTGCTGGTATTTATAATGCCAGTTACACTTGGGGCACTTCAGAGTCTTGCAAGAGTTCCTCGAATGCATCATGGTCATGTGGCCGCCCAGTGAGCGGGAAGATCCCAGGACGGTATCACACTTGGGACACTCAATGCCACTGCCAGGAGACCCTTCCCCTGCACCGGGGGTCCCGGGCATTGCGATGTGCTGGTGAGGAGGGGTCGGGCTCTCATCATCTCCTCGCATGGGGTCACTGGGATGAGAGGCCGTGCTGCCGTCTCTGCTCACACTGGAATCAGTAAAGTCTTTGCCACCCAAACTATAGTTAATGAGATCATTGCTACCATCCCGGTGTGCAGCAGTCAGTCTTGTCTTCTCTACATCGTCAGAAACAGTCACAGAGGAAGAAGAGGTACCCTTTTCAGTATATTTTAGCACGCTGGACGATAAAGGAGAAATGCTTTGGTTTAAGAGAGGGAAATCTTTGCTACTGGTACTATCCACTAGTTCGCCTATGCCATCATCATCAAGCTCATTAGAGTAagcatcttcatcttcatctgcGTCCACTGGTTCTGCAGGCTCACGTTTAATGGGGAACTCCCCGTTTGAATGCAAAGTGCTAATGTCCTTTTGCCTTTCACAGTTGCTCTCCTGGTCCCTGCCCGCTGACACAGATGATGAGTGGTTGAGGGACACAGAGGTAATGGGTGTTTTCATTGCTGAAACAGACAGGCCCCCAAGGTTCATTTCAGCCTTTGGCATTTGGATGTTCCTCAGTGGCTGGTCTGCTGAGGCAGCAGTGCTTGCACTTCCTTTCAAGAATGCAAAGCCAGCCTGCAAAGAATCACCATTTTCAACATGAAAAGCGCTCCATAAACCGTGAAAGCCGGGATCAGGACCTATGAGGTTTGCAGTAGAAAAGTGGGGTAAAACAGAATTGGATTTTTTTGGTTCCAGAAAGCTTATAAGAGGTTCTTTGTCTTTGCCAATCCCCTGTATTATGGCAGAGACGTACTTATTACTGAGAAGCTTCTGCTCCTCTTCATTGAGGGTCATCCGATGATCATGCACAGCATGGGTTACAAATGACCTAATATAACCAAAAGACAACTTGCAcaagaaacacattaaaattgGTTTCCTTTTCCCATCACTTACGCAACCATCAAATTTGGACAAGTCCACATTGTTAGGAACATCTTTGGACACACAGGAGTTTTTGGCGCCGCCATCAATGGTAAGATAGTCTTTTTCACTCTTGTGTCGGAGATCATAGACACGGAAACTGTGCAACACAGGACCAACTCCTGCAAATGCTGAGGTATTTGGGAAAGCCTGATCGGCTGTAAATGGTTTCCCGAGGGATGAAgcaatatgaaatgtattgataaCCTGTGGATAAAAGGACATGGGTGCAGCGGCAGACTGCTCAGTCTTGTCCCCAGCAGCGGTTTGGGAGTTTGAAAACATTGCTGGAGAGAAGAGGCTTTTCGCTCCGGGCTGTGCATTCTGGCCACTTTCTTTGGAGTCCTCGATAATGAAAGCTGACCCATCAGGCTGGTAAACTATCTCCCCCGTCAGATTCTCCACGTCACTGTCCTCCAAGTCGCTTATTTCGCTCTCGTTTTCATCCTTCAGAAGGGGAAGGCGGGCATTTGGGCAGTGGTGCtccatgtatttttgtaaacttGAGAAAGAAGTGGCACATTCGTTGCACGGGATCTCTTTAGCTGAGGCAACCTGAGTGGCAGCTGCATTCTCCGCACTAAAACCCAATGCAATCTCTCTTCGGCTCTCATCCGTTCTCAGGTTGTCATCTGTGGGGCTGTTTTCCCTGTCAGGCTCCATCCCTGCAACTTTCGCTGGCACCTCATTATCAAGATGTGTCGTTTCACATAGCTTTGATATGTTCTGCCCATTTTCCTGCCTTGAGATAGAAGGGGAGTCACAGGTTTCCATGGCAATCTCTACATGGGGATCTCATTTCATCCAGCCTGTCAGGGAccttttttttgttgtttttttcctcctccttggCGGTCAACCCTCAGCATCTCTGGGACCCGCTCGGTGCTCAGAGTTGGATCCCAGCGACCTGCCTCCTCTCTCGGCTAGGCAAGTCATCCCATCTCATTGCCCAGAGACTGCTTTTCCAACTCgcagTCGCTATCGAAAGGAGACCCTACAAGATGTTAATCGTTGGGGAAAATCAAGAGATCGCCTCTCCTTTATGAAAAAATCGAAGGAGGTGAATTGAGTGAGCTGGGCTCCAGGATCGCATGATAAGCCAGCAGCGCAGAGCAGCGCAGAGCAGCGCAGAGCAGCGCAGAGCAGCGCAGAGCAGCGCGGTGGCCGCAGTGACGCCGGACCCTCCTCTCGGGCTCTGCCTGCCGGGATTGCTGTGTCCGGGCTGTGTTTGCTCCTCGGCTCGGGAAAGCGGCTCCGGGGAAACGAGCCAGGGGATGAAAGCGCGGACAGCAGCGGCGCTTCCGACGCGGATATTGTGATGCCACCCATAACACACATGTAAAGAATCCAACTGCACAGCAAGAGCACACTTGCTTTCTTTTATTTGATCACTTTTTCGTTTAATTAGTCTGTGACGGGTGAATGTCAGAATTCTTTTACACagatgcatgtgtgtgtaggctacatgtatgtatgtatgtctgtgtgtttgttggtgtGTAGCCTATGTGGGGTCTGGATGGTTGTATGTCTAGAATTGGTCGTTTAAGTTACAGATGCTGGACTATGTTGTGCTCCGTTTTTAATAACGTGCGTTAGTAAGACAATCAGTGCTGCCTGAAAGACTTAAAGAAAAGTCCTGAGTCTCCCAGCTCACCCCTGCTCTAATGATGCACCTTTCGAGAGCTGCGCAATTAACTCTTTAGAAAGAAACCttagtgattttgttttaacgttacttttgttttctattaatcaTGAGGGAAAGAAAGGCCAAAGTAGGACGGATCTTTTGCAGGATTTAAAAGACTGATTCCCCTTATCTGGGCTACAGACACTTGGAAATCCCtctgcccccctccctcctACTTTCTCTGTTGCTGCTGCTCTTTCTCCCGGGGCTATTTGACAATGGCTATGTGTGTTAACTAACATTTTTCTTTACCTCCATATAACCGCATCCAGAAATAATTATAGATAGCCATCGggaatgtatttgtgttatttttgagCATTTTCAAGCCGTACGAAACGACAGAAGAACGGGATGTCCAAATACAATGCGCGAAGGTTGCCCAAATCTCGCTTATTTTGTACAGAAAAAGTCAAAGAGAACGAAAAATGTATGCTATTGTTCAAAGTAATACACTTAATTGCACAAACTACAACGTTTCGGTACTAAGCAGTCTTTTTGTTGTAACTTTTAGTTAACAGACATGAaggaagtatttttatttatatttttttttgctgaattgATC

Function

symbol description
zfhx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; midbrain neural keel; pharyngeal arch; and retinal ganglion cell layer. Orthologous to human ZFHX4 (zinc finger homeobox 4).

NR:

description
PREDICTED: zinc finger homeobox protein 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43194 True 4051 TUCP 0.49 3 23672125 23695801

Neighbor

gene id symbol gene type direction distance location
AMCG00019488 NA coding upstream 96598 23566581 ~ 23575527 (+)
AMCG00019477 NA coding upstream 970089 22693692 ~ 22702036 (+)
AMCG00019479 NA coding upstream 983848 22670411 ~ 22688277 (+)
AMCG00019478 ropn1l coding upstream 1015216 22644268 ~ 22656909 (+)
AMCG00019470 cct5,LOC107686714,LOC107695377 coding upstream 1083991 22582760 ~ 22588134 (+)
AMCG00019494 NA coding downstream 399494 24095295 ~ 24102633 (+)
AMCG00019493 NA coding downstream 413161 24108962 ~ 24149017 (+)
AMCG00019495 NA coding downstream 457696 24153497 ~ 24178723 (+)
AMCG00019499 NA coding downstream 484394 24180195 ~ 24182210 (+)
AMCG00019498 NA coding downstream 489871 24185672 ~ 24191616 (+)
G34510 zfhx4,LOC107586695 non-coding upstream 1082 23670582 ~ 23671043 (+)
G34509 zfhx4,LOC107705239,LOC107666618,LOC107586695 non-coding upstream 17480 23654427 ~ 23654645 (+)
G34457 NA non-coding upstream 385147 23210255 ~ 23286978 (+)
G34446 NA non-coding upstream 708127 22963457 ~ 22963998 (+)
G34445 LOC107590286,LOC107591257,LOC107701635,LOC108438556 non-coding upstream 742815 22929020 ~ 22929310 (+)
G34581 NA non-coding downstream 449338 24145139 ~ 24145909 (+)
G34621 NA non-coding downstream 543615 24239416 ~ 24239813 (+)
G34632 NA non-coding downstream 631639 24327440 ~ 24328019 (+)
G34695 NA non-coding downstream 1406588 25102389 ~ 25103872 (+)
G34704 NA non-coding downstream 1425369 25121170 ~ 25121378 (+)
AMCG00019480 NA other upstream 424026 23233270 ~ 23248099 (+)
AMCG00019481 NA other upstream 467875 23185816 ~ 23204250 (+)
AMCG00019475 march6,LOC105024238,LOC102207159,LOC101475102,LOC102312386,LOC104929871,LOC100690953,LOC102783154,LOC107746911,LOC107686038,LOC107732575 other upstream 1028899 22615623 ~ 22643226 (+)
G34170 rpl7 other upstream 3061236 20607474 ~ 20610889 (+)
AMCG00019428 LOC107595150 other upstream 4216988 19451247 ~ 19455137 (+)
AMCG00019492 NA other downstream 349888 24045689 ~ 24086481 (+)
AMCG00019496 NA other downstream 520076 24215877 ~ 24219991 (+)
AMCG00019535 NA other downstream 4917454 28613255 ~ 28710887 (+)
AMCG00019551 lsm5 other downstream 5605154 29300955 ~ 29305006 (+)
AMCG00019605 NA other downstream 8614236 32310037 ~ 32317571 (+)

Expression


Co-expression Network