G35144


Basic Information

Item Value
gene id G35144
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 29826657 ~ 29828650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43937
gtcaTTTCTCTGTactaatattgtttaatattgtgtttttttaaatacaaagtttCTTACAATGTTCTTACAATGAACAAAACCAGTTGTAAACACACGATGAACAATTATTTTGAGACAAAATCTGAAACCGAACACTTGAAAATCACAAAGCTTTTCAATTCAACAGGAACATTCTGCATGAAAGGAGAAAGAAGATAGGGGAAATAAACTCCTGCTACATAGATATAACCTTTACTTTGaattattgttgtaattataCTACAAACGTATGGAGAAGAGAGGGGGACACTGACTGAAGAatacccattttaaaatgtttatttgcatttatctatattgttaaaaaatatatttcaaggaTTTAACCTTTACAGAAAACCAGAGGGATATTTCTcctgacaaataaaaaatacttgtttAAATAACACATGGAGTGAAAAGccttgtgctttaaaaacattcaaccaTGACAAACGTTTTACCAAGAGATGCATTTACATCAAATTTCATCTTACATCTATAAATGTAAATAGGTAGTTTGCTGTTGAACAATGAACCTTCATGGAAGGTGAGATTGGCACTCTATAGTTCAAGAATGAAATTATGTAGATACAGTTCACATAGACTTTAACTCAGTGggttaaaataatgaatagtcTTTGACCGGGTAGAGCAACACTTGCTGCCGTGCAATAGCGTGTATAcatttgcaataataatttaatttcattaatcaAAAAGACACCCTTGACCAAATTAATTTATACTTAGAATATTGGGGGGGGTTTATATAAGACATTGGATCAAAAAAATTAATTAGAGGGAATCATAtttgcacaaaaaataatttgtaagaGTTATCTGttaaagaataatttaattttgcttatTCAATTCGACTAatatatatatactgtgacaCTTTGAGAGGGCTTAGGACAGGCGCGTTCTCAGAAAGCTGTGTCCCTGAGCAGAGCGAGTAATTAGCTGAAGGTGTGCGCAGGGGAGAGCTGCTCTGCTTACATAGCTCCCATTTTGTACCACACCccaaaatgtgtcacaatatctttacaaaaatgtacacaatttgCAATATCATAAAATAGGGGCAATCTACAGTTTTATCTGTATGCTAATTATACACATGATGGTATGCAAATTTGAGAAAAGTCTTATTCATCATatagaataatacaaaacaataatgctactctctttaaattaaataaacaaaaccagacCAAAAATCTGTTTCCTTGTAACACATATTCAACCAAccgattttttctttttaatacaccAATACAGGATTTGAATGCCTGTTTGTTACAGTAGCAGTGATATCTGtactagaaatatatatatatatatatatatatatatatatatatatatatatagtcaacggaaaagcttatttgaacatttacatacattatagGGAGGAGATGTAGAACATAGcttatatgttgttattttagtGTTATTTTCACTCAGTGTTTTCTTAGTGAAGTGACAAAGTATGAATGAATTATATCATGGTAACTGAATTAATATTTAGCTTTCTGTAATATCTGAACATCATACAGTACTATGCCCAACCTTTAATCCCTCTGTGATCCCTCTGTTTCTATCTCAGCAGCTTTGTGTCTATGCGATCTACTCACAGCAAAACATTCAGAGCCCATCATAGAAAGAGCATCGTTACTTCTGTCCAGAATCTCAGTGTGCGCTTTATCATCACTGTGCCTGACTCTGCATCATATACAACTACACAAGTTCAAATAGACTGTGATATTGGAGTTTTAAAGGATTAGTAACATTTGAGTGGACAGGATAGTTTCTCAACTACTTCCTGtctttttggtttatttttgtaataaaatgtatatgggTAAAAGACACTTCAATCCCAAATATTAGGCAGCTTGTCTATAATTTGTATGTTTCATTATTTCCTTCACACAGCAA

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU43937 True 1974 lncRNA 0.32 2 29826657 29828650

Neighbor

gene id symbol gene type direction distance location
AMCG00019555 wrnip1,LOC103135799,LOC106941779 coding downstream 41415 29773685 ~ 29785242 (-)
AMCG00019557 NA coding downstream 60051 29761329 ~ 29766606 (-)
AMCG00019546 NA coding downstream 384880 29440921 ~ 29441777 (-)
AMCG00019544 NA coding downstream 421635 29404063 ~ 29405022 (-)
AMCG00019545 NA coding downstream 422659 29403341 ~ 29403998 (-)
AMCG00019564 foxc1,foxc1a,LOC103370816,LOC104941097,LOC106532673 coding upstream 308081 30136731 ~ 30138161 (-)
AMCG00019563 foxf2,LOC102792585 coding upstream 338865 30167515 ~ 30172280 (-)
AMCG00019566 NA coding upstream 354865 30183515 ~ 30184507 (-)
AMCG00019571 irf4a,irf4,LOC108267998,LOC107565529 coding upstream 619543 30448193 ~ 30462200 (-)
AMCG00019572 NA coding upstream 644796 30473446 ~ 30477047 (-)
G35129 NA non-coding downstream 54465 29771586 ~ 29772192 (-)
G35111 NA non-coding downstream 94890 29718345 ~ 29731767 (-)
G35083 NA non-coding downstream 192921 29632194 ~ 29633736 (-)
G35014 NA non-coding downstream 876427 28949967 ~ 28950230 (-)
G35002 NA non-coding downstream 1000989 28825320 ~ 28825668 (-)
G35145 NA non-coding upstream 18994 29847644 ~ 29847858 (-)
G35157 gmds,LOC107721371,LOC107556133 non-coding upstream 253000 30081650 ~ 30126330 (-)
G35190 NA non-coding upstream 583548 30412198 ~ 30442590 (-)
G35214 NA non-coding upstream 678420 30507070 ~ 30520464 (-)
G35243 NA non-coding upstream 764291 30592941 ~ 30674883 (-)
G35101 NA other downstream 141355 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 180694 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 276495 29535744 ~ 29550162 (-)
G35067 NA other downstream 304673 29517996 ~ 29521984 (-)
AMCG00019500 pign other downstream 5731993 24052011 ~ 24094664 (-)
AMCG00019597 NA other upstream 1593379 31422029 ~ 31427583 (-)
G35476 LOC107575789 other upstream 2393414 32222064 ~ 32233398 (-)
AMCG00019645 NA other upstream 4682083 34510733 ~ 34522270 (-)
G35867 NA other upstream 5226369 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 6106146 35934796 ~ 35981536 (-)

Expression


Co-expression Network