G35157 (gmds,LOC107721371,LOC107556133)


Basic Information

Item Value
gene id G35157
gene name gmds,LOC107721371,LOC107556133
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 30081650 ~ 30126330 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU43951
GCTTAATTGggcttttgaaaatgtctttcaaCCTGCAGAAAACCCAGTTTACTTGTTACAACTGGAAAACAAGTCGAGCTCCTTTGCAATGCTTCTGGATGAAGCCAGACAACTTACACAGATCGATACACAGAGGTAGCACAGATTGAGGTTAATAACAAAAGAGCAGACGCTTAGATCGTAGAAACCCCAGgctttaatatacaaatatgtttttaaatggtccCCGTTTGTTAAAAACCTTCTATGAATTTAAGATAAATACAAGCACACcctattattttaaaggaacgAGATGCAAACAGTAACCTCatagaataattttaaaaggtgGATAATACCCATATAGTAAATATATGAGCCCCCCAAATATTTTTGATCATAACGTGCAAATAATTAAACCTTTCGATGTACATTAGATGTAATGAATATCGAAAGTTTAGTTAGgacattctttaaaataaggACAGAACCCgccaaaaaacaataaaaaaataatgatgatgacgatgattaataataataacaataataataaatactactagtactactactaattacaatacaaatcGTATTTAATAattctcaaaatgcatttttgcagACACTACAGCATAGACAGATGTagggaattattattattattggaattattattattattattattatgaatactaCTACTAGCACCACTACTACCACCAGTACTACTAATGAAAAACTGTATTCAGTGATTTCTTAAGCACAAATCCAAAACTGTGTGCAGGTTGATTTCTTTGGgagattttaaaattgtgaaGCACATCAAGCATTAGGACTATTTGTCATCAGCTGAATATCTGCTTCTACCATCTCCTTTACAAGCTCTTCAAAAGAAACTCTTGGTTTCCATCCTAGGCTCTTCTGTGCTTTACTGTTGTCACCCTGGAGAAattcCACTTCAGTGGGCCTGTAGAACCGAGGATCAACCCTTACATGAATCTCCCCAGTCTCTTGACACCGACCAacttcattttcattctttccGTCCCATACAATCGTCTTGTTGATGTACTTGAAGGCTTTTTCTACAAACTCCCGGACACTGTGGACCTCGCCGGTCGCGATGACAAAGTCCTCCGGCTCCTCCTGTTGCAGCATCAGCCACATCGCCTaaagagacacagggacaggaGCATTGTGAGTATCAGCAGTGATCGC

Function

symbol description
gmds Enables fucosyltransferase activity. Acts upstream of or within Notch signaling pathway; central nervous system development; and retina layer formation. Predicted to be active in cytoplasm. Is expressed in EVL; corneal epithelium; neuromast; and periderm. Used to study congenital disorder of glycosylation type IIc. Human ortholog(s) of this gene implicated in open-angle glaucoma. Orthologous to human GMDS (GDP-mannose 4,6-dehydratase).

NR:

description
PREDICTED: GDP-mannose 4,6 dehydratase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU43951 True 1203 lncRNA 0.37 5 30081650 30126330

Neighbor

gene id symbol gene type direction distance location
AMCG00019555 wrnip1,LOC103135799,LOC106941779 coding downstream 296408 29773685 ~ 29785242 (-)
AMCG00019557 NA coding downstream 315044 29761329 ~ 29766606 (-)
AMCG00019546 NA coding downstream 639873 29440921 ~ 29441777 (-)
AMCG00019544 NA coding downstream 676628 29404063 ~ 29405022 (-)
AMCG00019545 NA coding downstream 677652 29403341 ~ 29403998 (-)
AMCG00019564 foxc1,foxc1a,LOC103370816,LOC104941097,LOC106532673 coding upstream 10401 30136731 ~ 30138161 (-)
AMCG00019563 foxf2,LOC102792585 coding upstream 41185 30167515 ~ 30172280 (-)
AMCG00019566 NA coding upstream 57185 30183515 ~ 30184507 (-)
AMCG00019571 irf4a,irf4,LOC108267998,LOC107565529 coding upstream 321863 30448193 ~ 30462200 (-)
AMCG00019572 NA coding upstream 347116 30473446 ~ 30477047 (-)
G35145 NA non-coding downstream 233792 29847644 ~ 29847858 (-)
G35144 NA non-coding downstream 253000 29826657 ~ 29828650 (-)
G35129 NA non-coding downstream 309458 29771586 ~ 29772192 (-)
G35111 NA non-coding downstream 349883 29718345 ~ 29731767 (-)
G35083 NA non-coding downstream 447914 29632194 ~ 29633736 (-)
G35190 NA non-coding upstream 285868 30412198 ~ 30442590 (-)
G35214 NA non-coding upstream 380740 30507070 ~ 30520464 (-)
G35243 NA non-coding upstream 466611 30592941 ~ 30674883 (-)
G35304 NA non-coding upstream 910794 31037124 ~ 31037337 (-)
G35397 mak,ick non-coding upstream 1281652 31407982 ~ 31410657 (-)
G35101 NA other downstream 396348 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 435687 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 531488 29535744 ~ 29550162 (-)
G35067 NA other downstream 559666 29517996 ~ 29521984 (-)
AMCG00019500 pign other downstream 5986986 24052011 ~ 24094664 (-)
AMCG00019597 NA other upstream 1295699 31422029 ~ 31427583 (-)
G35476 LOC107575789 other upstream 2095734 32222064 ~ 32233398 (-)
AMCG00019645 NA other upstream 4384403 34510733 ~ 34522270 (-)
G35867 NA other upstream 4928689 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 5808466 35934796 ~ 35981536 (-)

Expression


Co-expression Network