G35578


Basic Information

Item Value
gene id G35578
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33109000 ~ 33113379 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU44478
tataagtcttacatcctagattgtaaaagctgataagtgcataTACACAgtcattgaaaataaacatacatgatTAACTAACCTTTTATACATATGACAATAACAGGTCGAGTTATGTATCACAACTGGCCAATACAACTTCCATGTTTTACAATTCTGGTTCATATGGTGCTCAGCAGAAACTGTATATTCATAAGAACAATAACACATAATTTCTCAAAGTCACAGACCTCaggaagaaatcaaataatatgcTATTAAAGATTAAAGAGGTTGAAAAACCTAATAGTGGGTCCCTCCAGTAGGAACATCTGATGTGGGTCAGTGACCGCTGTGATTGGTAGAACGTGGGCGACAGTTGTACCTGCTTATCTTCTTCAGTGTGAGCCGGGTAGTCCCTGGCTTTTGAGAGCCACAGCTTGGCTTTCTCCTGATCTTTCAGCATCATATAGGTCTTCCCTACCATCAGCAAATTCTTGCTATAGAAATTAGAATCGACTGTAGGAGAATAAGCAGAGGAAGAACAACACAAAGTTTGAGCCTGGTGAGAAGTCACCCCTAAAACACACAGTAGTTGACAGATTCCATGATTGCACATTGAGGAATAGACAACTCCATCATGAGTGTACTCAATGAGTGTACAATGGTTAGtaatcattttagatttaaattaatagcAATTTATGAACAGTGTTTGAAGTTAAGTCATGTGAAAGATAATTTTTTTTAGATTTCTATCCTACGCAACATGCAAACTTTGCTTTTCGAGTTATACCACCTGATCACtttagtatattattttatagaaacCAATCCcaaaatattttccttcaaTGGAAATGATTGCGATATTGAGAATGAAACCAAAATAATCTCACACTGACCTCCGCAGTGTCAATGtccttaaaatatacatatccTGCAATTAACACAGTAATGATGCACAAAGTCACTACAAGAAATAAGCCTAGTTCCTTCATAACATTCTTATAATTTCAAACACAAGAGCTAGTTACAGCTCTTACTAGCTCTGAACAAAATGTCAGTTGATACCCAGTGAGTCAGTGAGAcccatatttcaaataaaatgggaGAATCCCCTTCTTGGGCTGTGTAAGGATTATGAATGTAATTATCAGTagaaagacaataaaaacatctttgTCCAGCGATAGGTGGTGATGAAACGTATCACTTTAAGTGGGACAGTGGGATGGTGAAAGAAACACCTATCAACCAATCAACAGCAGATTTTTTTGGATACCAGCCAAAAAAACAAGTTAGCCAGGAAGGCAGAAAGAGAGATATCAAATAATGAtgtatctgtttctttctctgcatTCCACGTCCATTTAATATTCCAAATcccctgttgttgtttttttgtaataataaatattcgCATAGAAACTAGTAATAAGTACAAAATCACATTGAAACATGCTTTAAAGCAGTGTATAGCTGCAGTGGTTGAGCAACGATTGTGGGCTCCCATACAAGTTCAAATTCTTCCCCctctatacatacacacacattcataatcTAGATCCACTTACTGTAAAAccctgtgtaaatatatttacacatatagtCGCACATTAGCACTAACACGTACactataatacaaaataattctaCTCACTCATTCCTTTGAATTCAATCTGCAGTCATCGATGCATAAAAGCCCCAATCTACGCCATAGTCTAACAGTAACACATAGGATAGGACAGGAATGTGTGAAATGTAAACACACTACACTATTGTATGTCATGTTTCATGTATGACTTCCTGATGTGCAAGTAACATGTGGGTGTCTGATATGACTAAACTGCAcaaatcttgtttttcttgttacaaATCATCTTGTAGACACTTCTACTATACTTGCTCTTGTGTTCTTTGCCTTTGGATGTCCAAATACTGCACACCTTGAAGTGCGCACAAGTTAGATACGTTTCCTCTTTAGCAAAATTAAACTCTAAACTTCTAAATGTATGGGTTGCACGAATATGTACTTGGGACTGTTTGGGACATTTTGCGAGATGTAGCTTTTATTCTCCATATACCTGCTTCTGCCTTCAGGAAGAATTCCAGAGCCTGAAAAAAAGACCATGCAACTAAGCGGCAGTATGGTGAAAAAACGGTATAAAAATACGTCTCATTTATAGAAGAGATCTGGCCAAATGGATTAGCATTTGAACCATATAAGCATTTCCACTAACCATTATAGTATCATTAACCATTAGCAAAACAATATGAGGGTTATAAAAGTTCAAAAGGTTTAAAGGAGTATGTTAAGTAATTTCTCTTGGCTCAAGGACCCTCTGCAAAAGAAGGTTTTCTCTAAAAAGCTGAAGAGGCAtagaatagtaataatagtctGTTTCTTTAGTGATATATGCAGGAATGTAAATCAGAAAACCCCAATCAATTAACATATTCATTAAGCACACCATTGTGTCATACAAACATCTCTTGAATAGGACAGAAAATCACGAGTATCTGCCCAGTAAGACTCTCCACACCACATTTCCCACTTTGCTGCCAGTTACTGAAGTAATCTCTACATTATAATTGGTACTCTACAGGTTTGGGAACAAAGCCACTATGTTATTACCTCTTCATACGTTGAGGTGGGAGGAGATGCAAACAACATGGCAGCAATTTTGTGCTGATACCACGGCAATTCAGTGAAGGCAAAACACCTTTGTGAGAAGAGTTTTTGAAAGTATTTAGTTGACAGTGTACAGCAAGCATTCAAAAACCACCCAGGCATTAAAAAGTGTCCTTGTGTTGTATAACAAAGCTcagattcatattatttatattcctatTGAGAAGTGTGGTAACAatattgaaaaggaaaaggcCTAATTATATAGAAAAACACTCACCAGAGGCCTAAGATGTGGAGAGAAGTAGCATCTTTTGGATTCAGTTCAACTgctttctaaaaacaaatatgtgctAATCATATTGAGAAAATGCACTTATAGTTTCACTTATATTCACTTTACTGTTTTTGATTTCATCCATGGTTTCTTTCTCATTGCATTTTTCAATTGGCAGGGCACAAATAATGGGACAGTTCATTATCCAAATATACCAATAAACATATCATGGCAGGATAGTCTTGTTATTCTATTATGCAACatcaattgcttttaaaaactaaagCCAAATATCTCACCTCtaaatgttcttttattttataagcattTCCGATTTTTGTCTTGGTCCCTTCATAGTCTCCAACATCACTGAGACATACAGCATACCATTATGCGCAGGAGagcaagatgtttttatttccagtgcCTTCTTTGCATAGTTAAAGCCTTCATATATCAGTCTTTTCTTATCGTCAGCAGAGATGTGGGATAGGAAAGCCAGGTCTCGTGAGGCACGGGCCAGTCGCCACAGGAACTCTGCATTGTCACTGTGGAGGAAGATGCTGGCACTGTCAGTGACCACAATGAGCGGACCAGTAACCATGCAAGACAGTCGTGGACAGCCCTGTTGTTTGTAGGCTGCAGCCTTCTTCCATTCGTTTCACCTGAGTTTTGGATTGTTTAATTTTAGCAATTGATTTACTACACTGAACAAATTTCCAGGTTTTAAATGGGTtgtgaataaaacatttctagAAACTCTATGGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44478 True 3661 lncRNA 0.37 2 33109000 33113379

Neighbor

gene id symbol gene type direction distance location
AMCG00019616 wwp1 coding upstream 13799 33066122 ~ 33095201 (+)
AMCG00019615 NA coding upstream 65195 33034771 ~ 33043805 (+)
AMCG00019613 NA coding upstream 179808 32909002 ~ 32929192 (+)
AMCG00019604 NA coding upstream 918014 32182079 ~ 32190986 (+)
AMCG00019603 slc35b3,LOC102782645 coding upstream 1022237 32074208 ~ 32086763 (+)
AMCG00019614 cpne3,LOC104924704 coding downstream 4753 33118132 ~ 33141895 (+)
AMCG00019619 ripk2,LOC102795164,LOC107577259 coding downstream 560172 33673551 ~ 33694225 (+)
AMCG00019621 NA coding downstream 580923 33694302 ~ 33705462 (+)
AMCG00019620 NA coding downstream 631157 33744536 ~ 33746650 (+)
AMCG00019626 pter coding downstream 686168 33799547 ~ 33845086 (+)
G35553 NA non-coding upstream 133344 32975392 ~ 32975656 (+)
G35527 NA non-coding upstream 598051 32510681 ~ 32510949 (+)
G35490 NA non-coding upstream 788044 32319548 ~ 32320956 (+)
G35485 NA non-coding upstream 802653 32297404 ~ 32306347 (+)
G35480 NA non-coding upstream 823312 32285444 ~ 32285688 (+)
G35595 LOC103376870 non-coding downstream 271367 33384746 ~ 33385185 (+)
G35636 NA non-coding downstream 475004 33588383 ~ 33588587 (+)
G35658 NA non-coding downstream 565744 33679123 ~ 33724773 (+)
G35689 NA non-coding downstream 651342 33764721 ~ 33764947 (+)
G35691 NA non-coding downstream 674139 33787518 ~ 33787785 (+)
AMCG00019609 NA other upstream 716024 32324400 ~ 32392976 (+)
AMCG00019605 NA other upstream 791429 32310037 ~ 32317571 (+)
AMCG00019551 lsm5 other upstream 3803994 29300955 ~ 29305006 (+)
AMCG00019535 NA other upstream 4398113 28613255 ~ 28710887 (+)
AMCG00019496 NA other upstream 8889009 24215877 ~ 24219991 (+)
AMCG00019638 LOC107757182 other downstream 1340830 34454209 ~ 34578440 (+)
AMCG00019641 NA other downstream 1726937 34840316 ~ 34851323 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other downstream 2933098 36046477 ~ 36063850 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other downstream 3178967 36292346 ~ 36299547 (+)
AMCG00019676 NA other downstream 4064980 37178359 ~ 37213519 (+)

Expression


Co-expression Network