G35601 (LOC103376870)


Basic Information

Item Value
gene id G35601
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 33064366 ~ 33385185 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU44506
CctggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgcccaattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactGTCCAATTTTGGTGAGCTTGTttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacgagtggttatttcagtcaaagttgctcttctatcagcttgaatcagttcCGTCCCAGTCCCGGCctgtctggcaccaacaaccatgccatgctcaaaattgcttaaatcacatttcttccccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggtcagataattacattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatac
>TU44507
CctggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgcccaattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactGTCCAATTTTGgcattcAGTTT
>TU44508
CctggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgcccaattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacGCCAAATTCTGACTCTACCATCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactGTCCAATTTTGGTGAGCTTGTttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgaggcgagtgg

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU44506 True 686 lncRNA 0.46 3 33064366 33385185
TU44507 False 296 lncRNA 0.47 2 33376031 33385185
TU44508 False 415 lncRNA 0.49 3 33363611 33385185

Neighbor

gene id symbol gene type direction distance location
AMCG00019612 ralyl,LOC108431401 coding downstream 595820 32468283 ~ 32468546 (-)
AMCG00019610 ralyl,LOC108431401 coding downstream 673104 32360609 ~ 32391262 (-)
AMCG00019611 NA coding downstream 711520 32332456 ~ 32352846 (-)
AMCG00019607 NA coding downstream 738865 32317483 ~ 32325501 (-)
AMCG00019606 NA coding downstream 756930 32297477 ~ 32307436 (-)
AMCG00019622 mmp16,LOC108428959 coding upstream 10227 33395412 ~ 33428497 (-)
AMCG00019623 NA coding upstream 327169 33712354 ~ 33716946 (-)
AMCG00019624 NA coding upstream 337226 33722411 ~ 33734363 (-)
AMCG00019628 c1ql3,LOC102786996 coding upstream 465093 33850278 ~ 33859919 (-)
AMCG00019629 rsu1,LOC107657774 coding upstream 516104 33901289 ~ 33924953 (-)
G35551 NA non-coding downstream 128029 32936038 ~ 32936337 (-)
G35537 LOC100846954 non-coding downstream 189673 32838833 ~ 32874693 (-)
G35526 NA non-coding downstream 567843 32483222 ~ 32496523 (-)
G35516 NA non-coding downstream 733947 32329621 ~ 32330419 (-)
G35484 NA non-coding downstream 767082 32296853 ~ 32297284 (-)
G35637 NA non-coding upstream 203129 33588314 ~ 33588540 (-)
G35652 NA non-coding upstream 277566 33662751 ~ 33663162 (-)
G35656 NA non-coding upstream 285026 33670211 ~ 33670505 (-)
G35690 NA non-coding upstream 395036 33780221 ~ 33780455 (-)
G35735 NA non-coding upstream 611370 33996555 ~ 34063134 (-)
G35476 LOC107575789 other downstream 830968 32222064 ~ 32233398 (-)
AMCG00019597 NA other downstream 1636783 31422029 ~ 31427583 (-)
G35101 NA other downstream 3379064 29679229 ~ 29685302 (-)
AMCG00019554 zgc:56676,eif1b,LOC106578512,LOC105910901,LOC107657782,LOC105027100,LOC107396491 other downstream 3418403 29638566 ~ 29645963 (-)
AMCG00019556 NA other downstream 3514204 29535744 ~ 29550162 (-)
AMCG00019645 NA other upstream 1125548 34510733 ~ 34522270 (-)
G35867 NA other upstream 1669834 35055019 ~ 35055444 (-)
AMCG00019665 NA other upstream 2549611 35934796 ~ 35981536 (-)
AMCG00019698 NA other upstream 4504259 37889444 ~ 38110224 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other upstream 6031702 39416887 ~ 39505562 (-)

Expression


Co-expression Network