G36046


Basic Information

Item Value
gene id G36046
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 36205428 ~ 36208506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU45043
CCCCATAAACTCATCCTAACATGCGACCAGCACAGCCTTGTGGAGCAGCCATGCCCTTGCACTGCCGGGTCAGCTCTGTTTATACAGCTATTATAGAAATCTTCTATCAGTCAACAGCATCCTGTCAACCTCAGCAGAAAGTCACCTGTTAAAGCCTACGGGCAGCGGCGTGTCCAGAAAATGTTCAACGAGGTGGCCGATTGGGGGCACAGGGCAAGTTGATGGGGGCCATCCTATCATCACCGCTCTTACGGAGTGTCGTTCAGGGGGCTGTTTGGCGGGGGTGCTGACGGTATTTCATTCTCGCTGGCAGGGGGGGCTGATGGCATACGTAGGGCGGGTGCTGGGGGACCAGCCTCATTTCAGGGGGGCCATGGCCACCCCAGACCCCCCCTAGACACACCCCTGCCTACGAGTGCCCCGATGCAACAAGTTAATATTACAGGTAGGTAGCTATCTagctaacattattattattattattattattattattattattatgttttatttcttagcaaagtgcaaaaatacagttcagtacaaggcacataacattacaaattcaaatttacataatacaaagcaattcaaatcataatacattttacaaattccaatttacacaatatgaggtcttacatcctggattgtaaaagctgatgagtgcagacaagatgttaggtcacagtcaaggaccAAGGGAatgggagcataggggaaatcaaaataaacaatacaagtactagtaatgcaaggcaagtagtatgataaacattgtaatcttacaggagagtaaatggctaaattacaagtattatctgaaaagatgtgtcttgagtaagcgccggaagaaGGTAGTAGCAAGTTAGTCGTATTAATGGTCAAGTTAGCAAAAATAACTAACATCAGCGTTAGATAGTAAATATCCCCCCTCTAAACTTTTGGGGTACCTGCTGTCGGATTTGCAGGTGTTGTAGGTACACTGTTTCACCATTTGGTGCCTTAACGACAAAAGCTTGACGGACCTTCTTTAAGTAGTGACCGGTTGCTAAGGTAGGATTGGACAAGGACTGTTTGGGGGCAGGACTTTGCGAATGGTCAATTAtaacctttttcattttgtgctcAAATCAGGAGCAACATCTTTTAGTCTGTCACCTAAATTTGAGCCAAATGCTGTTAACAAACTTCCATAAATATTGCACTTTCATTGAAATGTCATTGTTCCAGTTGGTATACCATCTATGTCTTCCAGATGCCATCTTTTTAACGTTTTGACAGTGTGATCTGTAATATAGTTCTTCAGTTCTTTTGGGAAGCATTTTAGTtcatatattacatttgatgtagaatataatgcaaatgcaGAGACGGAAGCCAGAAATAACTTGGATCTTGCCCACAGTGCTACCAGCAGCTTGTACTTTTTGACACAACAGATGTAGAAACATATTTAGCAAATTTACCAAACAGAGTGGAACGCTGCCAGTGTTAGTCCTTCGTCTTAATAATAACCATCGTCAGTTTTATGCAGCACTAAACATATGGAAATACTGCAACATTTCAGGAAACGAAGCACTACAGGATAAATCAACATCCAATGATATGtctttcagtttaatatttgCAAGTCTTCCCATATAATAGCttattatatgtataaacaaCACTTTGCTGTGACAGGGCACTCTTCGATGGGTGAAGATTCACACTGGAAAGGAAACTGGGTTTTGTACAGGTCATCTATCTCAGGACAGTGAGGCCTGTATAAACCCGAATGTTAATTGAACACCAGAAGTACTCACTTGTTCTCCCGTTGCCACGCCAATTCCGAGGGGAGCCAAAGCCTGAAACACAAGCAGGTGTAACAAACCCAGCTGGTATAGAGATGCCCATATATGCTCATATCCAATGGGATAAACATGCATCAGTTGTACTGTATTACTGCTCTTAATCTCcttttaataaagataaataaaaccaaagatAGTTAATAGTATCTTTTACATTGTTTACACTTTCATTCAATTTCCTGTGAAATGTTTAAGATGCAATTTGAACGCCTACAAAGAAATACTACCACAACTATGCTTCAGACCtcaccatttttgttttaccataGATAGCATTGAAACTCATCAGCATCACCATCTACTGCTGAGGCCAACATGTGAGTGAGTAACAAATCAGCATCTAATCCAAGACCCAGTTCCCAGCAACCTTTTTCAGACCAGAGCTGCAGTCTGAGTAAAAAGGAGGTGACAGGAAGCTATTTACAGCTTTTGCTGTGGGCCAAGCTTTTAAATGGAGTAGAAATGGAAGCAAAATGAATGTATGGTCAATTACATCGCCCAGTCTGTGCCATCTATTAGCTCGCTTCCTTACTTTGGCAATGGCAGCGTGTCCCAGGATGTCATCAGGGGAAGTGGGTTCCTCTATCCAGAGAGGCTTAAACTCAGCCAACCTGGAAACCCACTCAATGGCTTCTGCAACATCCCATCGCTGATTGGCATCTATCATCTGAAAGGGGAGAGGAAATGCTGAAGATTGAATTGTGCACCGATTGCTTGTTTGCAGTAGTGACGTGATGCTTCTCTCTTTATAGGTTGGCGCTGTTTGGATACACTGCAATACATCTTTCTTTCCGATCAAACACTTAAATTGCATTGAAATATGTGGCTAAGTGgtgtttatttcagtattttcattGACGGCTCCACTGCAGGTGAATTGTGTACAGTGTTCTGCTACATGCTCCAACTTGATTTCATAATTATTCAATAAATCATTGTTCCTTCCTCttacctatttaaaaaaataaagtatagaCACGTGGTCCATATACTTGTGGGCCTTTGATTCCTGTGGAAACTCCCTCTAACTGCTAACTGCAAAGACTGCTGATAATATACCTGCCTGATTTACCATTCTGttaaaaaaagcagagaaacttACCAGAACATTGTCGGGTCCTATCATCTTCCTTATGAGACTGCACCTGCGAATATCATCCTGTAAATCTGCCCCCACTTTCACCTTAAACCTACCAAACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45043 True 3056 lncRNA 0.41 2 36205428 36208506

Neighbor

gene id symbol gene type direction distance location
AMCG00019670 tyms coding upstream 4237 36197051 ~ 36201191 (+)
AMCG00019669 NA coding upstream 14632 36187052 ~ 36190796 (+)
AMCG00019660 NA coding upstream 473170 35716345 ~ 35732258 (+)
AMCG00019653 NA coding upstream 831145 35351443 ~ 35374283 (+)
AMCG00019651 pfkp coding upstream 1057137 35106126 ~ 35148291 (+)
AMCG00019677 NA coding downstream 882517 37091023 ~ 37169287 (+)
AMCG00019680 myl12.2,LOC104925296,LOC105894777,LOC107732590,LOC103037289,LOC107746904 coding downstream 1157468 37365974 ~ 37371256 (+)
AMCG00019681 NA coding downstream 1163873 37372379 ~ 37378679 (+)
AMCG00019689 NA coding downstream 1191094 37399600 ~ 37406431 (+)
AMCG00019691 NA coding downstream 1201262 37409768 ~ 37419547 (+)
G36033 NA non-coding upstream 45272 36159814 ~ 36160156 (+)
G35933 NA non-coding upstream 490425 35714414 ~ 35715003 (+)
G35880 NA non-coding upstream 1106511 35098707 ~ 35098917 (+)
G35874 NA non-coding upstream 1119478 35077039 ~ 35085950 (+)
G35820 NA non-coding upstream 1395387 34809659 ~ 34810041 (+)
G36054 NA non-coding downstream 17532 36226038 ~ 36227349 (+)
G36088 NA non-coding downstream 419184 36627690 ~ 36628070 (+)
G36094 NA non-coding downstream 703035 36911541 ~ 36911979 (+)
G36098 NA non-coding downstream 737595 36946101 ~ 36946498 (+)
G36106 NA non-coding downstream 851912 37060418 ~ 37060644 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 141578 36046477 ~ 36063850 (+)
AMCG00019641 NA other upstream 1354105 34840316 ~ 34851323 (+)
AMCG00019638 LOC107757182 other upstream 1626988 34454209 ~ 34578440 (+)
AMCG00019609 NA other upstream 3812452 32324400 ~ 32392976 (+)
AMCG00019605 NA other upstream 3887857 32310037 ~ 32317571 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other downstream 83840 36292346 ~ 36299547 (+)
AMCG00019676 NA other downstream 969853 37178359 ~ 37213519 (+)
G36212 NA other downstream 1305481 37513987 ~ 37516027 (+)
AMCG00019708 vps41,LOC102790284 other downstream 2369810 38578316 ~ 38632178 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 6348034 42556540 ~ 42572080 (+)

Expression


Co-expression Network