G36516


Basic Information

Item Value
gene id G36516
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39707066 ~ 39709540 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU45657
ACAGTGCctaaatttttatttttcagtaagctacatttttttttttttcaaattagaCAGTTTTACATAATGACACAAAAAGAAACTTAAATTATCAATAGTTTACATGTATGCTTGATTCCAGTCGTAATGGAAGagtaagacaaaaacaaaagccctCATAAGGAAACGTCCATTAACAACTTAACTGCGGttagctttttttctttctttttaaaatgttatcatcGATTGTCCACTGCTGTTAGTGTAATGTGTTAtgatatgaaaagaaaaatattaaccACAGGGAGTTGAAAGAGAAAATGGTATGCATCAATACAGTCAActggtgcatttgttttttgttgtttacactGCATTACTCACAAACATGGTCGATTTACAACAAGCTGCAACCCTCCTAACACACACCATTGTGTCCACTCAACACATGGGGAGATGTTGAAGCAGCACgtggggagggaaagggaggtTCAGGTGTGCAAGGAGGTGGGGCTGGGTGGACCCTTGATATGAAGTTCTAGCTAACAAGAGTAAGAgatcaaaacatacaaatggaacaattaaaaaaaaaaaaaaaactacttaaaacacAAACCTTTTGCATTTGGGATTATACTTACTCTGCAGTGGCTGGTAGAGGTGTAAAGCTCTTGCCCCTTTTACCTAAGCAATCTTTGCTCCCTTTAACAgcaaaaagtattttgtgtcCATACAATAtctcaaatgttttgtttcgaTTTATTTAGTGTGGGATCCTTTCTTTGAATTCTGTTATCACCATTGCAGATACAAAAGCAAACCCCAAGAGACTCAcgcacaaaacacacaccagtAAGGAGCCAAGCttgattaataacaaaaaaacaaacatcatacTTAAATGTACTGTGACAAATGCAAAAGCTACACTTTTTAGCACAACTGACATCGGCATAACAgcactgggggaaaaaaacacgaCCTAGGCTTGGTAGACCAACTCAAGTGTGCCAGTTGTCCGGTACTGAGGGCACATCTGTCCCGGGTTGCAGCTGTTGATTTGCTACACATTTCAGCAGCTCTACTGATTACCCACAGTTGATTGGGGTGGGGAGAATGGGGGGGTAAGAGACTGAAGGaggagtggggaaaaaataaaaaataaaaaatggcacAGCTCAGTTAATTTGCCACATTGACTGCAGTCCAcacatataattaattacacaatacaagacaaacagtatgcatttatagatttgttttctttaactgTAGCAGACAACCCCTTTCTGTTGGTAATGATCAGTGAAATTATGTAGCTCCACTTTCAAACTGAGATCTGGACTCATCTAAGTGTCGTTGCGTCTCCAAAGAtcactattttttatttttttggaggggAGGCGGTGGAGTGGTGGCTTGGATACAAGGACCAATGACATATACTAATGAGTGTCCTATAAAAGGTAAAAAGGTTTTGCACAGTAAAGCTATTAAAACTCCTGCTGGGAGTGTGTTGGGCTGTCTATTGTAATACTCGAGTATCCTGTGCTTCAAAACTATGTGCTTCGTTGGACCATTTAGTGGTGTTAAATTGATTTCACTTAAGTATCAATTCAGCACAGCACCTTGCAGCAacggttttaaattaatttggattACAAAAATTTCAAAAGTAATGAGAAGTTCTACCACTCCCTCCcgcttaatttttttctttccacacagTGAAAGGGGTTATCGTGTTTCTTTGACACTTAACCATTACGATAATCCAGACCTTGTGCACTGACAATACGAAAATGGAATGAGACTatgacatttaattacaatCATACTTCCTTCTCCCCATACTGCTATGAGAAGGCACACTCAATTCAGCaaaccaaaaaattaaaataaaacctaaaaggaaaaaaacaaacaaaaaaatcaaaccacaacatttagttttaatctACATCCAGCTCAACAGCAACATTAATATTTCAACaagatcaatatatatattttttttaatcattttaaggTACCTCttatattttctgattatttacAACTGTACAAGCAAAGCACACACTTCCAAGTGcacatatttaatacagtattgaCTATCTGCATTTACAGGATTTATCCCACTCCCCCCAACaaattggaaaaagaaaaaaaaaaaaatcataagatCTTTCTTATATTACAAAACAAGTTTGCTGCTAGtcttgtacttttttttttttttttcttactagTAAGACTAGTGACTGTAGGTATAATAAGAGTAATCCTATGTGCCACTCTTGGTAACCCTTTGGGGACTTGAAAAGCAATAAACACTAGGctgttttatataaaagttAAGGCAAAGTCATtttcaagtttaaataaaattcaaGTTTTCAAACACTGGatggaaatatttatattatatatatacaaacacgcatgtattatacatataggtgtgcgtgtgtgtatatatgtatgtgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45657 True 2475 lncRNA 0.36 1 39707066 39709540

Neighbor

gene id symbol gene type direction distance location
AMCG00019722 LOC105017907,LOC106568825 coding upstream 292181 39382147 ~ 39414885 (+)
AMCG00019723 NA coding upstream 378225 39317255 ~ 39328841 (+)
AMCG00019718 NA coding upstream 642993 39033581 ~ 39064073 (+)
AMCG00019717 NA coding upstream 866686 38838764 ~ 38840380 (+)
AMCG00019710 NA coding upstream 874593 38825792 ~ 38832473 (+)
AMCG00019728 gtpbp4,LOC107721733 coding downstream 102537 39812077 ~ 39830831 (+)
AMCG00019730 wdr37,LOC102795438 coding downstream 145645 39855185 ~ 39889023 (+)
AMCG00019729 NA coding downstream 204442 39913982 ~ 39919021 (+)
AMCG00019733 NA coding downstream 981976 40691516 ~ 40702922 (+)
AMCG00019732 NA coding downstream 1008943 40718483 ~ 40729666 (+)
G36497 NA non-coding upstream 276509 39392492 ~ 39430557 (+)
G36464 LOC103376870 non-coding upstream 448520 39258031 ~ 39258546 (+)
G36454 NA non-coding upstream 624655 39082110 ~ 39082411 (+)
G36370 NA non-coding upstream 849210 38855839 ~ 38857856 (+)
G36189 NA non-coding upstream 2317104 37388328 ~ 37389962 (+)
G36585 NA non-coding downstream 638664 40348204 ~ 40348476 (+)
G36586 NA non-coding downstream 659692 40369232 ~ 40369540 (+)
G36588 NA non-coding downstream 671683 40381223 ~ 40381424 (+)
G36597 NA non-coding downstream 744643 40454183 ~ 40454484 (+)
G36598 NA non-coding downstream 780376 40489916 ~ 40490115 (+)
AMCG00019708 vps41,LOC102790284 other upstream 1074888 38578316 ~ 38632178 (+)
G36212 NA other upstream 2191039 37513987 ~ 37516027 (+)
AMCG00019676 NA other upstream 2493547 37178359 ~ 37213519 (+)
AMCG00019671 adcyap1,paca,LOC106578701 other upstream 3407519 36292346 ~ 36299547 (+)
AMCG00019662 hacd1,LOC105890814,LOC106590135,LOC106578705 other upstream 3643216 36046477 ~ 36063850 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other downstream 2847000 42556540 ~ 42572080 (+)
AMCG00019751 NA other downstream 2915190 42624730 ~ 42627105 (+)
AMCG00019755 NA other downstream 3251116 42960656 ~ 42962658 (+)
AMCG00019758 NA other downstream 3552354 43261894 ~ 43271192 (+)
G36954 NA other downstream 3620752 43330292 ~ 43333313 (+)

Expression


Co-expression Network