Gene
RNA
| Item | Value |
|---|---|
| gene id | G36539 |
| gene name | gtpbp4 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030124.1 |
| NCBI id | CM030124.1 |
| chromosome length | 51038645 |
| location | 39812310 ~ 39813571 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| gtpbp4 | Predicted to enable GTP binding activity. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleolus. Is expressed in gill. Orthologous to human GTPBP4 (GTP binding protein 4). |
| description |
|---|
| nucleolar GTP-binding protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU45684 | True | 277 | lncRNA | 0.43 | 3 | 39812310 | 39813571 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00019727 | larp4b,LOC106599484 | coding | downstream | 72067 | 39733389 ~ 39740243 (-) |
| AMCG00019725 | NA | coding | downstream | 84020 | 39710987 ~ 39728290 (-) |
| AMCG00019721 | LOC106599479 | coding | downstream | 442113 | 39363964 ~ 39370197 (-) |
| AMCG00019720 | NA | coding | downstream | 616477 | 39195494 ~ 39195833 (-) |
| AMCG00019719 | NA | coding | downstream | 715198 | 39082102 ~ 39097112 (-) |
| AMCG00019726 | idi1,LOC107713854 | coding | upstream | 12784 | 39826355 ~ 39830587 (-) |
| AMCG00019734 | NA | coding | upstream | 916122 | 40729693 ~ 40766188 (-) |
| AMCG00019738 | NA | coding | upstream | 1734347 | 41547918 ~ 41563384 (-) |
| AMCG00019739 | NA | coding | upstream | 1760705 | 41574276 ~ 41576305 (-) |
| AMCG00019743 | tmx3,zgc:152808 | coding | upstream | 2575409 | 42388980 ~ 42406310 (-) |
| G36534 | NA | non-coding | downstream | 102782 | 39706602 ~ 39709528 (-) |
| G36495 | NA | non-coding | downstream | 431602 | 39379808 ~ 39380708 (-) |
| G36470 | NA | non-coding | downstream | 518937 | 39245792 ~ 39293373 (-) |
| G36456 | NA | non-coding | downstream | 730331 | 39078503 ~ 39081979 (-) |
| G36386 | vps41 | non-coding | downstream | 1192653 | 38618841 ~ 38619657 (-) |
| G36557 | NA | non-coding | upstream | 84316 | 39897887 ~ 39901757 (-) |
| G36576 | NA | non-coding | upstream | 376249 | 40189820 ~ 40191361 (-) |
| G36582 | NA | non-coding | upstream | 521572 | 40335143 ~ 40335556 (-) |
| G36590 | NA | non-coding | upstream | 590680 | 40404251 ~ 40404583 (-) |
| G36605 | NA | non-coding | upstream | 832902 | 40646473 ~ 40646687 (-) |
| AMCG00019724 | dip2c,dip2ca,LOC106522911,LOC106532211 | other | downstream | 306748 | 39416887 ~ 39505562 (-) |
| AMCG00019698 | NA | other | downstream | 1702086 | 37889444 ~ 38110224 (-) |
| AMCG00019665 | NA | other | downstream | 3830774 | 35934796 ~ 35981536 (-) |
| G35867 | NA | other | downstream | 4756866 | 35055019 ~ 35055444 (-) |
| AMCG00019645 | NA | other | downstream | 5290040 | 34510733 ~ 34522270 (-) |
| AMCG00019731 | NA | other | upstream | 156604 | 39970175 ~ 40123987 (-) |
| AMCG00019741 | NA | other | upstream | 2257491 | 42071062 ~ 42078932 (-) |
| G36817 | NA | other | upstream | 2730545 | 42544116 ~ 42544524 (-) |
| G36862 | NA | other | upstream | 2830753 | 42644324 ~ 42656393 (-) |
| G36982 | NA | other | upstream | 3484660 | 43298231 ~ 43360906 (-) |
