G36557


Basic Information

Item Value
gene id G36557
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 39897887 ~ 39901757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU45705
TATAAATGACagttagatttatttatttattattcttccAGTCTATGATTTGGCCAagctttattgatttaaatacttACAAATTACTCATTTCCTCTACAACATGAACTTCTGAGCGTTCTCTCCAATCTAAAGGATAATGTTTTGAGGAAGACAAGACAGttgaataaatgaaacaaaaatcagCATATTTTATTAGGTTTTACAAGCTCGTTTCTTCCTGATGCTACTACTTTCACACTAAAATGTGCCGTTTGCAAAAGCAGATAATACAATGGTGTTCAGTGAAAGTACCCACATACTGTTTTTGCTATTCTCAACAGCAAAGTTTCCCCGTTTTCTATCTTTTTCATCTCCgttggacatttatttatttaaatttttgaaTGATTGTATGCGTTTCAGGAGTCTGCATGTCCGTCTTGAGTACCAAGTCATTTTGAAAACCTGTTGTCTGGTAAATTTACGATATAACAAAACCACACTCGAAACTAAACATTCCACATGTGGCCAGcagttttaaaagtataaaGCCAATTAACCATCAGGTGTCATTTAAGGATGAAATGGATCTTTTCTCAGGGTAAAAGCATCACCTTAGTGCAGACTCAAGAAAACAATCAGGGGCTTTAACTAGATGGAGAGAACTGGAATAATGTGGCTTGTGAGAAGAGAGGTTTAAAATCACACCACAGGGAAAACTAAATAGTGCATctcacaaaaaataagaaaagatagAAAAGAGAATGATATTTGGCAGTGGGTAGCCACATATTATTCTGATCGgcaaaaaaaagatacattttactcATAAGCAGTTTACTTCAATGTTTCTTCCACTAGGACAGTGTTTTTACAAGTAAATTACAAGAAGGCAAGTGATGTGGTAACTTTCCAAAACACTTCTGTACAAAAgcagtggaaaacaaaaaaccaaagaaatctgcaaaaaaaaaaaaggcaaaaattacctatacattaatttaactttcCTCTAAAAAAGttctaaagaaagaaatacattagaAAAGAGCATTTAAACATGtggtaaaatactgtttaatatGGTGAAGACAATGCATGACCTTAGCTATTGGAGTAAACAAAGCTATCCCTTGACAAATACCTGGAATTTCAAAATCTGCTGACCACAAATATCAGCCACCCAGTGATGAtcactagtttcagaccagtcatTTGAGAAGGAATACAGCAAACAGTTTAATGTCCAGAAATGTGTCAACTTACATATATTAAAAGACTGAACCAAGTAATTAGCAGGGCTACACATGCATGAACCTTGAAGAAATcccaacagtttatttttttaattaagagtgGCGgtggaatacatttaattcaagtAAAGCAGTACAATTATTAACTCAAGTGAAAATTTTATTACGTTTGAGTTTGTTAAAGCTAGattagaatgcatttttttagcTTCTAAAGTGAGACATTGCATAATGGTTTTGATCTGGTTTGTAAAGGAACAGTTTCCATATACTTAAGATTGATTGTAAGAAAGTAGAGTCCTGAAGTATCAGTGAGGCAATTACTTTCACTGTTGGGTGCACTGGTGATACTAAAGGAGATCAAAACGTCACATTAAACTAGCCTGTctaacacatacataaaaaaatcccCAATGTGCCTGAATATCTGTGAcataaaaagtgaaattaactAGAAGTAACAGATCATTTAAAAGTAAGAACTGCAAAACAAAGCTTTCGGCAAGGCATACTAACAGTAGTGATAATCACAGATTAACCCCCATAAGAGTTTATGCCAGCATTTGctttcaatgaaaacaaaccacaattaACAGGAGTTTCTAATGCAGTTGACTTCAAGCAACAGTTACTCGCACAACAATCCTCCTTTTTCACTGCACTCCATCTCCCTACAGACCCACACTTCTGGCACACTGGACACATCACTTTCAATTAGCTTAATATAGGATGAAGCCTATACAAAGGTTACTACGACtatttgaactgtattttgATCATTCTTCTTGGGATTTCCTCCTGATAGACTCAAAAGTGGGCCCTTCACGCAAGATGTTTGGAAATGAGCTAACGATAAAATACAGAGCCATGTAATTATTGTTCATactaattcattaaaaacaagcatGTATTGTGTTCATGAGGAAAATCTATATATGCACTGCAGTTTCTAAATATGTGTAAATGGGAAAAACGTACGTCTGAAACCAGTGATGGTACAGATTCAGTTTTGAGCACATACTTTCTAGTTTCTTGGACACagtaacttgttttgttttaaaaaaaacgGGGGGCAGTTGTTTCGATTTCTGTCACTATTCAAGACAAGCAATCTGATACTACCTGAGATACTGACATGAATCAAAATCATCTTGGGCCCCTAATATAAGAATCACAGCAATTTGGCGGTATTTTATACTGCTGATTTTATATTGACGGGCACCGATTCTGGAGAGACTTTTTACTTCTAATATACAGAAGGatattctgaagtgtttaggtaCTATTTTCCCAGGGCAAGATCACTATGAGAAAAAAGGCATTTGTTCCAAGTGCAAAGAAGGGCACTGAAGATTTAATCTCACTGCATGGGACTCGGGAGTGCAGTAACAGTTCCTCAACCTAACCAATTAGAAACCCTATTTGTAACAGCCAGCTCCTCTCTTTTCTCCCTGAAGTAATGCCTTCCCCTACGTTCATGGCATAGGCTCGGtctacagttttattttattttccccaattTGACAGTCAAGTTATCTACAATGGCTATGGTGAAAGTATAAAATTTGACTTGTGTAACAGACGAACCTTACCTGCCTCAGGTTAAGATAAATGTTCATGAAGCCAGTACATACCTGCACCATATACAGACAATTGAGGAGCATACTAACATAAGACAGAGCTTCTATATACTGTTGCGAAGCTCCTACCTAATCCCATAAAGTCTACATCAAAAGCACAAGATGGGTAAAGGGATGGAGGAGGGCAGATGTGTGACATCATCCTTTATTCAAGCAATGATATCCATTTCAAGGAAGAGTTTCACGAGTCACGGTTCTACTTTTTACCTCTTCTTCCAGAGCTTGAAATGGATTATTTACTGACCACAGTGTTTTATAATcaggattaataaaataactatttaaaatagaaaCGCCAAAATGCAGGACAAAGCTCTTACATCTCAGTAACGGGGAGAACAGggacgttttttgttttttaaagaaataaagaataaaaaacacacactttaaatacattCCATGCAGACTGTGCACATTGTAAgcagagcaggaggaggagggggggtggggtacAACATATACACAAGACTTCCTCccagaaaaaaaattgtttcaCATTGATCCGAGATCAGCACAAGGCCTTGGACAGGGCAGCAGTTTGTGAGTGACCTGTTCAGTAGGTGTTTATTTCTCCTGCAGCAGGGCAGTGATGTTGATATTCCAGCCAATGGCCTGGCGGTCAAAGCCACAGGTAAACAGGTTGCAGGTTGGGTTGTCCTCACTCCAGGCAGAGCAGCACACCATGCGTCGATGTCCCTTCAAGTAACACCACAGATTACACATTTCTATCTATTCTCTAAGCCCTTCCTTtaaggttttttattttctaaatcattAGATGGAGCTGTAAATATCCCTTAGGAGACCCAGTGTGACATTATCAGTCTGCTCTGGGAACATttggtgagtgtatatacatttatttttatttttttgcccaGCCTGtgacatatatatgtaacaCTGACTTCCTAAGGGTTTTTATTCTGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU45705 True 3813 lncRNA 0.37 2 39897887 39901757

Neighbor

gene id symbol gene type direction distance location
AMCG00019726 idi1,LOC107713854 coding downstream 67300 39826355 ~ 39830587 (-)
AMCG00019727 larp4b,LOC106599484 coding downstream 157644 39733389 ~ 39740243 (-)
AMCG00019725 NA coding downstream 169597 39710987 ~ 39728290 (-)
AMCG00019721 LOC106599479 coding downstream 527690 39363964 ~ 39370197 (-)
AMCG00019720 NA coding downstream 702054 39195494 ~ 39195833 (-)
AMCG00019734 NA coding upstream 827936 40729693 ~ 40766188 (-)
AMCG00019738 NA coding upstream 1646161 41547918 ~ 41563384 (-)
AMCG00019739 NA coding upstream 1672519 41574276 ~ 41576305 (-)
AMCG00019743 tmx3,zgc:152808 coding upstream 2487223 42388980 ~ 42406310 (-)
AMCG00019744 NA coding upstream 2512853 42414610 ~ 42442771 (-)
G36539 gtpbp4 non-coding downstream 84316 39812310 ~ 39813571 (-)
G36534 NA non-coding downstream 188359 39706602 ~ 39709528 (-)
G36495 NA non-coding downstream 517179 39379808 ~ 39380708 (-)
G36470 NA non-coding downstream 604514 39245792 ~ 39293373 (-)
G36456 NA non-coding downstream 815908 39078503 ~ 39081979 (-)
G36576 NA non-coding upstream 288063 40189820 ~ 40191361 (-)
G36582 NA non-coding upstream 433386 40335143 ~ 40335556 (-)
G36590 NA non-coding upstream 502494 40404251 ~ 40404583 (-)
G36605 NA non-coding upstream 744716 40646473 ~ 40646687 (-)
G36650 NA non-coding upstream 1100305 41002062 ~ 41002677 (-)
AMCG00019724 dip2c,dip2ca,LOC106522911,LOC106532211 other downstream 392325 39416887 ~ 39505562 (-)
AMCG00019698 NA other downstream 1787663 37889444 ~ 38110224 (-)
AMCG00019665 NA other downstream 3916351 35934796 ~ 35981536 (-)
G35867 NA other downstream 4842443 35055019 ~ 35055444 (-)
AMCG00019645 NA other downstream 5375617 34510733 ~ 34522270 (-)
AMCG00019731 NA other upstream 68418 39970175 ~ 40123987 (-)
AMCG00019741 NA other upstream 2169305 42071062 ~ 42078932 (-)
G36817 NA other upstream 2642359 42544116 ~ 42544524 (-)
G36862 NA other upstream 2742567 42644324 ~ 42656393 (-)
G36982 NA other upstream 3396474 43298231 ~ 43360906 (-)

Expression


Co-expression Network