G37022


Basic Information

Item Value
gene id G37022
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 43526407 ~ 43555509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU46264
CACAGCTgaatattttacttattaatCTATAAAAACTTTACAGAttgtacagtttatatatatatatatatatatatttatatttatatctcaAACTACTCAACAAAAAATAGGTCCCcacagatgaaaaaatattgtaCCAAGAGTTCAGGATAAAGGCAGATATGCAGatatacacactgtacagtTTTCCAATGTGAAAAGGGAGCAGGGCCAGGTCAGATACAAACTATTGACTGTACAAAAATAAGGTctgatttaaagattttttatacatacatatatatgtatgtatatgtacacacacacacacatacacatacatacatacatatatatatatatatatactcccCTCTACCATACATTCAGAAAGATAAATTCATAAAACCCAGGTAGTTCCAGATACCTGCAGTCAGAAAATATTACCCACTCCTCAGGAATGCAAAATAAGTATATGTACACTGGGGTGGGATCACAATGCCAGGTTTATAAATAATGCgctgtttgtatgtatgtatatatatatcacgaGGATTCCGTGTTGGCAAAGTCCAAAGTCAAACCAGTTTTGTAGGTGTCCCAGCCAGGGGTGCTTGTGAGCCGTTACACCCGAGGGCTTACAGGGTCCACGGAAACCCGTCAGAATTGCATCACATACCTCCACTTTCTCCAGACGCTCTCTTATGATCGGTTTCGGAGTCGATTGCCTTCCGGAGGGCACTCTGAACTGAGACATGGGGTCAACGCGCGCCTGTCACTTCAGAGGCTGGAAGAAGGATCTTAGACCGTGATCTTGTGACTTTGAGTGTCGGGGTGAGTGTTCTGCTTCCACAGCCCTTTAGGACGATATACATTCTCTATTCCTATGGTTAGTAGGAGTAGTATTGAAGTGAAGGGAAATTTGAATGAACAGATTGTTCAAATTTCCCTCTGGACAGTGCTGAAAGTGCTGTGCTAGGGACCACTTTCAGCACTGTCCAGAGCAGCACATTTCTACAGCCTTTGAAATGAGAGACAGGTTCACATTTACAATCCGTTTAAAAATCGACCTCTGGCACACAAATCCTCAAAGCAATCGAATCTGAATTCATCACTGAAGGGATACTGACAAGTAAGCAAAAGTTatctatataatatttatagGTGAAATACCCCTTAAGTGTGGACTTTATATAATTCAAAAGATCAGAAAAATTGCACTTGACAATGCAACTCCTCCCCCCCACCcgaaaaccatttatttatatatatatatatatataaataaatgtattttctctacTAGATCAATCCTAAAGCAGTGAATATAATGACGTAGAATCCGGATGACCTGAATGTTAATAGTATTGCAGTCGaagttatttacttttttcagtgTTCATCAAAGCCCTTTTACGCGTTTAGAGTTTCACCCCTATTATTACgccagaggaaaaaaaaagttacagttGTAGttctttttaaacacattcttaaaaaaaaaaaaaaaagtgacacattttcctctttttaaGACAAAGGCGGCCAACTGACTATGACACAGACCTGACCCCGCCTACAGACCCTACAAACTAGCTGATGAATCCGAGTTAATGACAGTCTTttgaaagtttatatttaaGGTCAAGGGCAGATCAAGGTAAATATGATAGACTACAAGACCACCATTATGAGACGAGATCCCTCCTCAGCAGAAAGTTATAGTGACGGATTTCATCTGATGAAGTAGTGCACATTGGTATTCCAGTGAATTACAATACTGAGGAAAGttgtggggagggagagagagaatattaGAGGATATCTAACCTAAAATGAAAGctacaatgttgtttttaattcaaaactcATTCACAGATTCTACCAGCAGCTCGTGCTCCTGTGAGGGGATTACTATATAATTTCGATGTCCCCATCTTCCTCCTTTCTCTGGGTCCCTTTCAACAGACCAGCCCTGTGTTCTGGGGGACCAAGCTGATCAAACGTATTTGGCAATGACAGTATTAAGTCTTAGGAAACGACTTTTTGACTTTGTTGCTTAGTTATTCTCCATCCATTTCATTCCAAGACGATGAGAGCACCTTGGCTTAGTCTTTCCAGTAACTGAAGTGATAAAGGCACGGTGGGAGCTGCGTCCTTCCCCAACAAGATGGCACACCCTCAACACTGCATGGTTTCGACTGAAATAAGTCCTGACTGATTCTTTAAAAACTGCTGTCTTTCACAGAAGAGGCTACATTTCTCATTTCCGAGGACTTGGACCGGCAGTTGTGGAGTTGCTTAGCATCACACGGACATTCAAATGGCTCcgtctccatctccatctcagGGCCCAAGCGAGCTACACAGGCAGGCTGGTGTCATTTTGTGGGAAATTGCCTCATGCCTCAAGTCAAAATGGCATGCTATTGACATTAGAAGCGAATAACCACTGGACTTGATCTTTGTACCACAGAAATCTCCAATATTAACTCAAATGTGTCTAAATGTGTGTGCGCAAGTGCGAGAGTGCATGTGAGCGAGAGTGTGTACATTTATTCTGGTTTTAACCTGATTTTAGTTCAAGCTAAAATGTAACTCATTAAAGGTCTTCACTTTACCAAGGGGCCTTTAAAAAAGGAGCTTTTTCCCCACAAAACAATCCAAGTATTGACAAAGAcctaaattcaatatttaaaatataccaatAAAATCTCACAGCCagaattaaagtattaaatataaaaagtgaaagTATGTTGTTGCTtagtgaataaatacaaataaaaatgagatcAGTTGTACCTTAGTGAGTCAATTCGAAACATTGTTTAAGAAATGCCAGACTATACTGCAGActataaatgtaatgaatattattaaaatagtacATTATAACAGATTTAAGTTTTAGTTTCTATGGTAGTGCAGAAAATCCTTCACTTTGGACTTTGCCAACACAATCTCATGTCTAGCCcctaaagataaaacaaaaaataaaaacagtacagaTAACAATCCATTGCATCAAGAATAAAAGGTTTtccattctttcttttctttgctttcttttcatgGAAGGAATCTGAATAGTGTGAGAGTGTTTATCTTCTTCTTtaacttattaaataaaaatatttttaagtgaaactaaaatacatttacatatagaAAATATTTGGTGTAACATATCATTCATCctgaaactgtaaaaaaaaaaaataataataatctttcatttgtaaatgtataagcAAATAAACTAGATGAAATTAGACCAAAAATActacattaaaaagcaaaacacttgGTATAACTTAAGTTTACTCGTCTCGTGTGTCTAATACTGCCGAACAGAAGAGGCGTTTGAAGGAGCCAGTGGTTTCTTCATGCTTCTAAGGAAAAGGTATCTTccaaaggaaaaggaaaaacgTGTGGAAAAGAAGCTGGTCGAGACGAGTCCCTCAGTGGATACCAGATGCATCGTGGGTCTCCAGAGGGAGCTGATGACCCAGCGGCGCGTCAATCCGACGGTCCGGTCTGTGACCTTTCTGTCCTACAGACTAAAACCTGTGGCCTTTGAGCCTTCTAGGGAGGACACAACGTTGACCCGTTTTCTTAAATTCCTTTTTTCCTGCGAGCGAAATCGTAAGGCTTGTTTCTTCCTTATACAAAAATAGACATCAATccaactttttctttctttttctctcctgttAAGACAGGATAGACCCTCCCCCACCACCTGGACTCGgacaaaaaaactattaaaaaagtattacagTACCAATGTTAGCAGGTCCATGTAGCTGATAAAGCACATTAGGCTGAGGAGCAGGGAGGGTGTGCTGGTTTCGCAGCTcccaggtttaaaaaaatgttttggggtTGGCATTGCTTTTCTCTTGGGCCCAAAAAAAACTCCCCCCaagaaaaacctgaaatgtttgcaacacacacagcacagcagttcTGTTGagtacaaaaacataaaaaattaacTCAGGGGGCGTGGAGCAGTTCCTAGAACTCGTCGATCTTCTTCTGCAGGTACTTGAGAATGGAGTCCATGCCCTGGGGGGACCCCCACACCCGCTTGAGGACCTCGCACTCCTTCTCATTGGCCTGCTCTAGTGCTGCCTTAGTGGTGCTGCGGACCAGAGCTTTGGACTCCCGGAGGACCTGGGGCGGGGGAGAG
>TU46265
CACAGCTgaatattttacttattaatCTATAAAAACTTTACAGAttgtacagtttatatatatatatatatatatatttatatttatatctcaAACTACTCAACAAAAAATAGGTCCCcacagatgaaaaaatattgtaCCAAGAGTTCAGGATAAAGGCAGATATGCAGatatacacactgtacagtTTTCCAATGTGAAAAGGGAGCAGGGCCAGGTCAGATACAAACTATTGACTGTACAAAAATAAGGTctgatttaaagattttttatacatacatatatatgtatgtatatgtacacacacacacacatacacatacatacatacatatatatatatatatatactcccCTCTACCATACATTCAGAAAGATAAATTCATAAAACCCAGGTAGTTCCAGATACCTGCAGTCAGAAAATATTACCCACTCCTCAGGAATGCAAAATAAGTATATGTACACTGGGGTGGGATCACAATGCCAGGTTTATAAATAATGCgctgtttgtatgtatgtatatatatatcacgaGGATTCCGTGTTGGCAAAGTCCAAAGTCAAACCAGTTTTGTAGGTGTCCCAGCCAGGGGTGCTTGTGAGCCGTTACACCCGAGGGCTTACAGGGTCCACGGAAACCCGTCAGAATTGCATCACATACCTCCACTTTCTCCAGACGCTCTCTTATGATCGGTTTCGGAGTCGATTGCCTTCCGGAGGGCACTCTGAACTGAGACATGGGGTCAACGCGCGCCTGTCACTTCAGAGGCTGGAAGAAGGATCTTAGACCGTGATCTTGTGACTTTGAGTGTCGGGGTGAGTGTTCTGCTTCCACAGCCCTTTAGGACGATATACATTCTCTATTCCTATGGTTAGTAGGAGTAGTATTGAAGTGAAGGGAAATTTGAATGAACAGATTGTTCAAATTTCCCTCTGGACAGTGCTGAAAGTGCTGTGCTAGGGACCACTTTCAGCACTGTCCAGAGCAGCACATTTCTACAGCCTTTGAAATGAGAGACAGGTTCACATTTACAATCCGTTTAAAAATCGACCTCTGGCACACAAATCCTCAAAGCAATCGAATCTGAATTCATCACTGAAGGGATACTGACAAGTAAGCAAAAGTTatctatataatatttatagGTGAAATACCCCTTAAGTGTGGACTTTATATAATTCAAAAGATCAGAAAAATTGCACTTGACAATGCAACTCCTCCCCCCCACCcgaaaaccatttatttatatatatatatatatataaataaatgtattttctctacTAGATCAATCCTAAAGCAGTGAATATAATGACGTAGAATCCGGATGACCTGAATGTTAATAGTATTGCAGTCGaagttatttacttttttcagtgTTCATCAAAGCCCTTTTACGCGTTTAGAGTTTCACCCCTATTATTACgccagaggaaaaaaaaagttacagttGTAGttctttttaaacacattcttaaaaaaaaaaaaaaaagtgaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46264 True 4180 lncRNA 0.39 2 43551308 43555509
TU46265 False 1591 lncRNA 0.35 4 43526407 43555509

Neighbor

gene id symbol gene type direction distance location
AMCG00019763 LOC102782841,LOC107589980 coding downstream 127277 43369896 ~ 43399130 (-)
AMCG00019760 acad11 coding downstream 243602 43274030 ~ 43282805 (-)
AMCG00019757 myrip coding downstream 374749 43018109 ~ 43151658 (-)
AMCG00019756 NA coding downstream 550069 42975368 ~ 42976338 (-)
AMCG00019754 NA coding downstream 810797 42695829 ~ 42715610 (-)
AMCG00019765 NA coding upstream 1390 43556899 ~ 43563516 (-)
AMCG00019769 NA coding upstream 248651 43804160 ~ 43809705 (-)
AMCG00019771 nrn1,LOC106590090,LOC106578581,LOC107713755 coding upstream 319416 43874925 ~ 43877635 (-)
AMCG00019772 NA coding upstream 327039 43882548 ~ 43929432 (-)
AMCG00019774 ssr1 coding upstream 491178 44046687 ~ 44056603 (-)
G36977 NA non-coding downstream 223347 43266893 ~ 43303060 (-)
G36907 NA non-coding downstream 583908 42942242 ~ 42942499 (-)
G36894 NA non-coding downstream 677721 42848457 ~ 42848686 (-)
G36882 NA non-coding downstream 763673 42762531 ~ 42762734 (-)
G36841 NA non-coding downstream 943934 42582143 ~ 42582473 (-)
G37021 NA non-coding upstream 234 43555743 ~ 43556744 (-)
G37048 NA non-coding upstream 266825 43822334 ~ 43822820 (-)
G37171 NA non-coding upstream 853708 44409217 ~ 44410259 (-)
G37174 NA non-coding upstream 881411 44436920 ~ 44443701 (-)
G37232 NA non-coding upstream 1168265 44723774 ~ 44735394 (-)
G36982 NA other downstream 165501 43298231 ~ 43360906 (-)
AMCG00019761 NA other downstream 183701 43330289 ~ 43342706 (-)
G36862 NA other downstream 870014 42644324 ~ 42656393 (-)
G36817 NA other downstream 981883 42544116 ~ 42544524 (-)
AMCG00019741 NA other downstream 1447475 42071062 ~ 42078932 (-)
AMCG00019768 NA other upstream 21800 43577309 ~ 43713777 (-)
AMCG00019799 NA other upstream 1340990 44896499 ~ 44910150 (-)
G37492 NA other upstream 2809829 46365338 ~ 46393098 (-)
AMCG00019824 NA other upstream 4336694 47892203 ~ 47901933 (-)
G37806 LOC100846954,LOC107575789 other upstream 4967159 48522668 ~ 48523702 (-)

Expression


Co-expression Network