G37105 (ssr1)


Basic Information

Item Value
gene id G37105
gene name ssr1
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 44053074 ~ 44056603 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU46357
ATTGTTGTCCTTGTAGTTGAGGTTGATCACAAGACCGAAGGGCCGGCCGCCCATTGGCTCAGCGGGGATGAAGGAGTACTCGAAGGTGGCCTGGCGCAGGGGCGGGACCACCGTGTTCAGCTGCAGGGCCGTGAAGTTCTGGATGTAAAACTGATAGTCCTGGGGATAGCGGAATGAGGCATCCAAGGATTCCACCACAAATTCCTCGCTGCCCTTGTTGGTGAAACCAACCAGGAACTTCACAATGTTGTTGGCGGGGAAATCTTTGGCAGCAAGGTCCCCAGGGCTGGGCATCGTTGTTCTGGACTTACCCTCTCCTTTCACAAAGAGGATGGTGGTATCAGCGTTGGGGGAGGCTTTTGCTTCCCCTGAGGTTACatcctcttcttcttcatctttttCTTCCGTCAACTCTGTCGTTTCATCGTCTTCCACTTCAGCTTCGTCATCTTCATCCTCTGCGATCACATCATCCGCTGCCTCTTCATCCTCTGTTGCATCTTGCGCTGCCACGAGAGGGCCTCTGCCATTGAGGAGGATCGTCGCGGGAAACGCCAACAAGGCGATCAGGAGTAATTTCGGCAGAAAATTCATCATTTTCCCCCAAGACTTAATACACGGTTCCCGATCAGATCTCACTCTCTTCGTCTCCCTGACCCCGCGTTTCTTCAGCTTGGTAATAATGGCGTATGCTGCTCATCCGGGTATTGTGCAGCCCTTTTTCG

Function

symbol description
ssr1 Acts upstream of or within cellular response to estrogen stimulus. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Is expressed in several structures, including axis; fin; hatching gland; periderm; and polster. Orthologous to human SSR1 (signal sequence receptor subunit 1).

NR:

description
PREDICTED: translocon-associated protein subunit alpha

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU46357 True 725 TUCP 0.53 4 44053074 44056603

Neighbor

gene id symbol gene type direction distance location
AMCG00019773 rreb1 coding upstream 8399 44014510 ~ 44044675 (+)
AMCG00019770 NA coding upstream 88806 43949035 ~ 43964268 (+)
AMCG00019767 fars2,LOC103399687 coding upstream 347989 43702543 ~ 43705085 (+)
AMCG00019766 NA coding upstream 487035 43565086 ~ 43566039 (+)
AMCG00019764 cdyl,LOC107689409 coding upstream 500769 43527447 ~ 43552305 (+)
AMCG00019775 riok1,LOC107589821,LOC107689403 coding downstream 3922 44060525 ~ 44070657 (+)
AMCG00019784 NA coding downstream 209638 44266241 ~ 44269213 (+)
AMCG00019780 mllt10,LOC107595146,LOC107549202,LOC107695408 coding downstream 220248 44276851 ~ 44332148 (+)
AMCG00019781 NA coding downstream 276042 44332645 ~ 44339115 (+)
AMCG00019786 bmi1 coding downstream 388288 44444891 ~ 44453292 (+)
G37102 NA non-coding upstream 1643 44046329 ~ 44051431 (+)
G37070 NA non-coding upstream 118755 43934103 ~ 43934319 (+)
G37068 LOC103376870 non-coding upstream 138255 43914192 ~ 43914819 (+)
G37011 NA non-coding upstream 475817 43576248 ~ 43577257 (+)
G37000 NA non-coding upstream 502526 43459446 ~ 43550548 (+)
G37132 NA non-coding downstream 179611 44236214 ~ 44288369 (+)
G37135 NA non-coding downstream 272416 44329019 ~ 44334697 (+)
G37168 NA non-coding downstream 347989 44404592 ~ 44406930 (+)
G37199 NA non-coding downstream 458365 44514968 ~ 44517929 (+)
G37231 NA non-coding downstream 724514 44781117 ~ 44781942 (+)
G36954 NA other upstream 719761 43330292 ~ 43333313 (+)
AMCG00019758 NA other upstream 781882 43261894 ~ 43271192 (+)
AMCG00019755 NA other upstream 1090416 42960656 ~ 42962658 (+)
AMCG00019751 NA other upstream 1425969 42624730 ~ 42627105 (+)
AMCG00019747 tubb6,LOC108431516,LOC100711323,LOC107688430 other upstream 1480994 42556540 ~ 42572080 (+)
AMCG00019785 NA other downstream 379319 44435922 ~ 44443756 (+)
G37372 sugct,LOC107687505 other downstream 1222852 45279455 ~ 45569937 (+)
G37561 LOC100136012 other downstream 2734424 46791027 ~ 46791485 (+)
AMCG00019820 efr3a other downstream 3566165 47622768 ~ 47658001 (+)
G37779 NA other downstream 4394025 48450628 ~ 48451167 (+)

Expression


Co-expression Network