G37716


Basic Information

Item Value
gene id G37716
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 47906059 ~ 47971592 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU47086
TCATCTTCTCTGAGtccaattttcagctttgcccaacacctggtcgtctaatggttagacggagacctggagaggcctacaagccacagtgtctcgcatcCACTATGAAaattggtggaggatcggtgatgatctggagGTGCTTCAGAAAAGCCGGAattgggcagatttgtctttgtgaaggatgcatgaatcaagccacgtacaaggcttgtcctggaagaaaacttgcttccttctgctctgacaatgttccccaactctgaggattgttttttccagcaggacaatgctccatgccacacagccaggtcattcaaggtgtggatggaggaccaccagatcaaggcCCTGTCAtagccagcccaatctccagacctgaaccccattgaaaacctcaggaatgtgatcaagaggaagatggatggtcacaagccatcaaacaaagccgagctgcttgcaTTTTTGCACCAGGattggcataaagtcacccaacatcaatgtgaaagactggtggagagcatgccaagacgcatggAAGCAGTTAACAcagcatcttttttgttattttaaccagttgtcattttctgcaaataaatgctctaaatgacaatatgtttatttggaatttgggagaaatgttgtcagtagtttatagaataaagcaaaaataataattttacccaaacacatacctataaatagtaaaaccagagaaactgataatttagCAGTGgacttattttttccagagctgtatatatatttatgcacaAAAGgcactcttaaaaaaaaaaaaaaacatacacagtcTGTTAAAAGCATATGCTGGGATGAACTGAGAACGCATTTCAACAATAGAATACATCTATTTaaccatttatataattataagcTATGTTTGAACTGAATATTACAGTGAAGTACAGCATTAAAAACAGGTGCTTGAAGATTGAGCAGATCACATCAGCcctcattacattattttaaacgttttttttttttatcaaaggaTACACCAATCTTGCTTTCTAATTAAATCTTCCAAATCTTTTTTAAGCAGACAACCTAGCTGTTCTCTTTTGCTTGTgaacatgtataaataatggcACTGTTAAGTAATAAAAACTGGTATACAAGCCTTCCTtttatgataaataattaaatatactaaTTATAAATAAGGAATACACAGTATTAGACTAAATTATTATCTTTGTCTTCCTATATATTGACCAACACAGGAGGGCATATGGGACCTGCTTGTAAATGTAGCATTACAAAACAAGGACATCTTAGCATCAGTATATACATGGTACAAGGTTTGTAGGTTGCTGTTATGTACAGGTGGTACTATCTTTTGCATAatctattgttttattgtttgaagtATTACAAAAAGTAGTTGGTTTAAAACCTAGGACAAAAGTATTTTACTCTTCATACAGTCATGGTCAGTCTCAGTGTTGCTCATGTCTGATTGTAGAAACTGTGTGAGGGAATAATATTGAAGAAATATACTGAACTTTGATTCTGGAGTTCGCCAAACTCAGTTCGGTATGCATTCCTGAATTGTAATATGCTCTGAGTATTTTTCTATAGCAGCCTTTAGATTCAGACAGTGCCAtggcttttttgtattttgtggaaGATTAGCTGCTATGAACTACTGTTTGAAGCtttggtttttaaatgttagGATCAACAGGGTAGGATAATATCATTTAGCACttcccttcctttttttttggtttgtttttacttgtgGTATACCTAAGAATTATACTGCACGGTTGATTCCTCTGCTCTGGGGAATAATTggtattgattttatataaaaaaaatggctTCTAAAAATCATTCTCAAATGTGATTGTGAGTTAGCGAATACAGGAATCAATCAAATAATGAAGAAAGTGCAATTGCAGGAATTGTAtcctctgtttttctttaaaggaaTGTTAAGACTCCCTGAGTTAAACTGTTTGCTTTTACAAATGCATTGCCtatatgtatcaaaataaatgagcaaa

Function

GO:

id name namespace
GO:0008410 CoA-transferase activity molecular_function
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0008260 3-oxoacid CoA-transferase activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU47086 True 2033 lncRNA 0.36 2 47906059 47971592

Neighbor

gene id symbol gene type direction distance location
AMCG00019826 NA coding downstream 27202 47803064 ~ 47878857 (-)
AMCG00019828 NA coding downstream 115172 47790564 ~ 47790887 (-)
AMCG00019823 kcnq3,LOC107660218,LOC107721728,LOC107663349,LOC107749193 coding downstream 200175 47690365 ~ 47705884 (-)
AMCG00019822 NA coding downstream 238197 47661324 ~ 47667862 (-)
AMCG00019818 adcy8 coding downstream 625572 47245538 ~ 47280487 (-)
AMCG00019829 NA coding upstream 205374 48176966 ~ 48184937 (-)
AMCG00019832 tmeff1 coding upstream 218545 48190137 ~ 48219430 (-)
AMCG00019838 NA coding upstream 406051 48377643 ~ 48400596 (-)
AMCG00019839 NA coding upstream 594018 48565610 ~ 48598978 (-)
AMCG00019846 dnajb6,LOC105900649 coding upstream 1214722 49186314 ~ 49198381 (-)
G37690 NA non-coding downstream 54028 47851603 ~ 47852031 (-)
G37681 NA non-coding downstream 217543 47687034 ~ 47688516 (-)
G37652 NA non-coding downstream 605431 47300127 ~ 47300628 (-)
G37622 NA non-coding downstream 888896 47016837 ~ 47017163 (-)
G37610 NA non-coding downstream 996487 46835708 ~ 46909572 (-)
G37738 NA non-coding upstream 127806 48099398 ~ 48099619 (-)
G37815 NA non-coding upstream 572051 48543643 ~ 48549181 (-)
G37836 NA non-coding upstream 706584 48678176 ~ 48688913 (-)
G37874 NA non-coding upstream 895573 48867165 ~ 48867486 (-)
G37942 NA non-coding upstream 1390711 49362303 ~ 49366167 (-)
AMCG00019824 NA other downstream 4126 47892203 ~ 47901933 (-)
G37492 NA other downstream 1512961 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 2995909 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 4192282 43577309 ~ 43713777 (-)
G36982 NA other downstream 4545153 43298231 ~ 43360906 (-)
G37806 LOC100846954,LOC107575789 other upstream 551076 48522668 ~ 48523702 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 2624604 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 2734248 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 2991821 50963413 ~ 50966929 (-)

Expression


Co-expression Network