G38053 (LOC105030512,LOC106573797)


Basic Information

Item Value
gene id G38053
gene name LOC105030512,LOC106573797
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030124.1
NCBI id CM030124.1
chromosome length 51038645
location 50486380 ~ 50489297 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU47468
GAAGACTGCGGTGGAATGAAATCCAGAAGCACATTGGATTTGAAGAACTGAGAAAATACATcgcaaaatacatatttacactcAAAGTAGAAAGATAATCATTACgaaatatttgaaattacacacacaagCTGTACTGAGACAAAACCTATACCTGTAACTGATGACCAAGACTCACCCAAACTCACACTTATAACCAGGTAGGTTATAGCCAAAtaaccaaataacattgtggcaAAACTAATTTGTCAACTCCAGGTGATGTGAGAACGTTgtataataacttaaaaaatgtttttagtcCCAGTATCATCAAATGTGACCCACACTTATATTCAAGGAAAACTGATCACTATGTTCTTATAAGTTATCCTGTCCAATAAAGacaagaaatacacattttaagtcTTTATACACCATGTGGAAATGCAGGCGCCATTGTAGAAACACTTCGGCTGACACATAATCCTGGCGATTGTTGATGATTACGAACAACTGAGACACAGTTGttatacacaataataataaattgatgtattttgaGTTTCAAATTACAAGCAAATGTGCTGTAACAGGAACCAGAGGAGCTGGAACAACCAAGCCACCCTTCCCTGCCCTAGAGGTTGAAATTATAAATGTTGACcttttttcctgtcttttctttctatttGCTGAGTAGTGCTGCTTATGCAGTTGGCACAGTAACACCCACAGATGTGCACAACGAATGGGTGACAAACTGGCTTCCCTACactaaatgacagaaaatgtttcAGAGTCCGGGGCAGTGATGACAGTATAACAGGCATATGGggaaacaatgtggggaagcaatcaAAATGCtaaggtatattgtcaaaaattTTGatcaagggcagtaatgttcagactgtactatgcactagttagagctcatctggatactgtggacagttctgggctccacacttcaagaaagatatcgctgctctagacgcagttcagaggagagcaaccagaccttttccaggtctgaagggaatgtcctactgagagactgaggacctgaaccttttcaccctggaacagaggagactacgtggggacttgattcaagtcttcaaaatcatgaaaggcatcgaccacatcaaaccagaggagcttttccagatcagcagggacacacgcacccggggacacaaatggaaattgggcttcaaggcattcaagacagaaaacaggagacacttcttcacacagatcaaactccccagcaatgtggctgaagcgacaatttgtgaacattcaaaaatagactggataggatccttggatcacttcgttattaacCAAGCACCAGGTTAATAGGTCTTCAAATGCCAAAGAACAGCAGCAAATGACCTTAAATCGGCAACGTGTTCCCAATTACAAGATGCCACAAAAATATTTCactcatattgttatttatagatGTTAGTAAACTGAAATGTTAGTAAATCTCCTTTGTAGCACTATGCTGATTCCACCTCCGGTACAGggcaacattttaaatgggaTTAAGCTCTACAGGAGTGGAGGGGTATTTTGAACAATGGGGCTCCTGACAGTAATATAGGTGGGCAAAACGTGTGCTTTGTCTCTGTAAATTAGTTAAGGGCCAACTTCAGAAGCAGTGCAAAAAGTGAAGGAAAGGTTTTTGATATGATATATGCTGAATTGTGGACTGTACCATACAAGCAAGGTGGTTTGTGGGTAATGATACATGTCTTGGctgtaagacacacacacattatatatatatattactcaGCAACAAAGGAAATGTCACTTTTTCaagacactgtattttaaagataattttctaaaaatccaaataactttacagagctttattgtaaagggtttaaacaatgttttccatgcttgttcaatgaaccataaacaattaatgaacatgcacctgtggaacggtcgttaagacactaacagcttacagactgtaggcaattaaggtcacagttataaaaacttaggacaatAAAGAGACTgactttctactgactctgaaaaacactaaaagaaagatgcccagggtccctgctcatctgtgtgaacgtgccttagAGATGCtacaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccgtactgtgagacacCTAAgtcagcgctacagggagacgggaaggacagctgatcatcctcgcagtggcagaccatgtgtaacaacacctgcacaggatcggtacatccgaatatcacacctgcgggacaggtacaagATTTACACCAAGaatgcacaatccctccatcagcgCTCAGACTGTGCACAATAGGctgagaggctggactgagggcttgtaggcctgttgtaaggcaggtccttaccagacatcactggCAACAGCGTCGCccatgggcacaaacccaccttcgctggatgtgatttcctgcaagacaggaatgtcagtgttctgccatggctaGCGAAGATCTCAACCCCATTGAGCACGTTTGGGACCTGTTGGAttggagggtgagggctagggccattccccccagaaatgtcagggcttgcaagtgccttggtggaagagtggggtaacatctcacagcaagaactggcaaatctggtgcagtccatgaggaggagatgcactgcagtacttaatgcagctggtggccacaccagatactgactgttacttttgattttgacaccccctcctttgttcagggacacattattccatttctgttagtcacatgtgtGGGAAACCTGTTCAGTGTATGTCTTTGTTGTTGagtctttttatgttcatacaaatattaacacatgttaagtttgctgaaaataaaagcagttaaaagtgagaggatgtttctttttttgctgagtt

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU47468 True 2918 lncRNA 0.42 1 50486380 50489297

Neighbor

gene id symbol gene type direction distance location
AMCG00019863 NA coding downstream 135136 50345149 ~ 50351244 (-)
AMCG00019860 NA coding downstream 424256 49998081 ~ 50062124 (-)
AMCG00019859 htr5a,LOC106578632 coding downstream 635661 49848558 ~ 49850719 (-)
AMCG00019857 insig1,LOC107094588 coding downstream 778997 49699238 ~ 49707383 (-)
AMCG00019856 NA coding downstream 834353 49648920 ~ 49652027 (-)
AMCG00019862 actr3b,LOC107550018,LOC107664653 coding upstream 4805 50494102 ~ 50509867 (-)
AMCG00019871 NA coding upstream 430969 50920266 ~ 50921526 (-)
AMCG00019868 kdsr,LOC107681813,LOC107727538 coding upstream 437983 50927280 ~ 50943520 (-)
AMCG00019870 vps4b coding upstream 456575 50945872 ~ 50952372 (-)
G38045 NA non-coding downstream 111668 50374487 ~ 50374712 (-)
G38016 NA non-coding downstream 598189 49887929 ~ 49888191 (-)
G38007 NA non-coding downstream 713646 49772504 ~ 49772734 (-)
G37950 NA non-coding downstream 1008796 49477379 ~ 49477584 (-)
G37942 NA non-coding downstream 1120213 49362303 ~ 49366167 (-)
G38130 NA non-coding upstream 259456 50748753 ~ 50749458 (-)
G38135 NA non-coding upstream 277500 50766797 ~ 50767409 (-)
G38139 NA non-coding upstream 295693 50784990 ~ 50786016 (-)
G38145 NA non-coding upstream 341336 50830633 ~ 50843640 (-)
G38152 NA non-coding upstream 356680 50845977 ~ 50850167 (-)
G37806 LOC100846954,LOC107575789 other downstream 1962678 48522668 ~ 48523702 (-)
AMCG00019824 NA other downstream 2584447 47892203 ~ 47901933 (-)
G37492 NA other downstream 4093282 46365338 ~ 46393098 (-)
AMCG00019799 NA other downstream 5576230 44896499 ~ 44910150 (-)
AMCG00019768 NA other downstream 6772603 43577309 ~ 43713777 (-)
AMCG00019865 LOC102778867,LOC107557236 other upstream 106899 50596196 ~ 50698163 (-)
AMCG00019866 NA other upstream 216543 50705840 ~ 50712143 (-)
AMCG00019869 NA other upstream 474116 50963413 ~ 50966929 (-)

Expression


Co-expression Network