AMCG00019873


Basic Information

Item Value
gene id AMCG00019873
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 77166 ~ 103648 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019873
ATGTGCCTACTGTGCAAAGACAAGCCCGACCCAGGCGGCATCCAGCGGCGCATTTGCAGAGGAAGTGGAAACGTGCCGAGAACGCCGCTGTGGCGTCCCGTCCGCGTGACGTTAGTCTCTGGGCTGCATGACGCCTCCAGCCCAGGAGCCATGAATCCCCTGGATGGAGACCCAGACAGGGGAGCCGAGCTGCACAATGGGCACAGCTCACCTTCGGGATTCATCACTTTCTTGGTGGGAGAGGACGGGCAGCTGCTCACTGTGCAGGAGACCGAGGACTCAGGGGAAACCCCTTCCTCAGGGCCAAATCTGCAAGTAAAGAGACCTGTAGGACGTCCCAGGAGGAACCCTTTCAATCCATACACAGACCCGGTGCTTCAGGGAACTGCCTTCCAGGTTCCAGCAGTGAAAACAGAATGGCAAGGCCTTGAAAACCTAGAAGGGGGAAGTGCAGACATGAGAGAGATCAAACAGGAGCCCTTCTCCACACAGCAGGACGGGGGGTGCAGGAGGACTCTGAGGAAGAGGGCACCGGTGTCCAGACCGGGGCACAATGTGAAGAAGGAGGAGGCCGATGACTCTGAAGCTTGTCAAACTCCATTGGTAACAGGAAGGCGTAGGAGAGCGAATCTCTCAGCtgGGCTCTCTGGTAATACTTGTCAGCAGTGCGGAGCTAAATTTTCCCGTCGCGGGGGCTTGTTGGACCACATTCAGTTTGTGCACCAGATGTACCGGCCATACCCTTGTGAACCTAACCACCCCACCATGGCCACACTGAGACCCAAGCAAGAGGCCCTAAAACTGGAGGCGAAGGAGGAAATAGGTTCGGACTTAACCTGCCCAATTTGTGGAGCCGAGTTTTTAAGAAGAAACAACCTCTACgaccacattttatttgtgcatgaGAAGTACCGGCCACACTTGTGCAAGTATTGCAATCAGGAATTCAGAAGGCcgacagaaatgaaaaaacacattgaaagaaCTCACAGAGGAAAACGTCAGGAGACACTCTCATCTCCACGGTGCAAAGAGCGTTCCCTTCCAAATGACTCTTCcactggcatttccaaaagacgTCCTAGGCGGCGTGTCCCTGCCCGGGCAATGTCCAAGAGAACTCGCAGTGTGACTTTCCATGATCGTTTCAGGCCAAGTGATGGGCAGACACCGTCTTCAAAGGGACCGGTCAAGGGGAGTGCTGTAGCCAGCTGTTTTGAAACTCTCAACAGTCAGGCCACACGTTTAACTTCCAGGATTTCCAGGAGCAACCGAGCACAGGTCGCATCTGAGAACAGACGTGGGACATTTCCCAAGGTGTCATGTGACCCAACTGCACAGATGGCGTCGATCAATCCAGTTGACAGTAGAGAGGGCAAACCTGGGGATTACTTTGGTCATATTATCGATGAAAATGAGGCTTCCTTTGATCGGGTGAAAAACGAAAATTGGCAGAGCCCAATGTCATTCGACCAATCTGTGGCTGGAAGGGGCACAGTTGATCAGATTGCCAGTGATCGCACTGTAGATCAGATTTTCAGTGGCAAGGAGACGGGTATAACAGCCACTGATAAGATGATCAAAAGGAATTCTGTGGAAAAGACCTGTTCTAAGGAAGGATACAACAGATGGTCTGAACACAGCTCTGACAGCACTGACCTTGACGAGTTCACACCATGCTGTGATGAGATCAAGAAGGAGCCCACAGACGCAGCCCTGTGGTGTCCGTGGCCTCAGCCCGTAGAGCCCATGCAGAATGCAAttaaagaagagagagaagcagtcACCGAGCAGCTGGTGTACTCCTGTGACATCCCGTTCTGTGGACAGAGTTTCATCGACAAGAGCGGCTTGTGGACACATCGAAAGGAGCATCAGGTTATAGGTTCTGATTTTAGCTGCTCAATCTGTGGAGCCAAATTTGTCCGCAAAGGGAACCTATACGACCACATTCTGTTTGTGCACGAGCACTACCGGCCACACTGCTGCTCGTACTGCACTCGAGACTTTTGCAGGCCGAGAGAGATGAAAAGACACATTGCGACGGCTCACCGAGGAATGAGAAAACGCCGAGGGCTGAGGACTGACGTTCCCAGAGCGAACGGAGCGCACAGCGAACGGACAGAGGACAGGACACTCTGCACTAAAGCGGATTGTAAGGCTGCTGAACCGAATATCTCCGATTGCCTGTCGATGATCCGGATAAGCAATGTGACGTCTCTGGTCATGTCCCAAGACGAATTTCTGCAGATGGCAGCCAGCCTAAAGGATCTGCCTTCTTATCCCCTCTTcagcagaaacagaaaccaaaGAGGAGAATACGTCAAGCCTGATGCATTCGACACACTCGTCAGACGTGCAAACAGGGCCGTGTGCAGGTCGGTGTTCAGAGATTGCGTCACAGATGAGGGGATTGACACGTGAATCTCTCTTCACTTTATGGGAATTTGCTCAGCTACAAAGAACCTGTTCCAATCTGTTcaacattcattcattttccagatgacttagttttttttatacttaatatattaagtaaaaaaacaagtctTGTGTTGAGTGCTTTCAATGCTGTTGAGTCTTCAAGCCCTTTCTGATGTTTTCAACACTGGGCTCCAGGGATCTTATTCAAGCGGCCTCTTTCTAGGTGCAGGACCAGTTCAAAAGGTTGCTCAGATCCAGACTGTGCCACCCCAGGGGGAAGCACACTGTGCTTAGTGCTGCTGGGGAGATCCTTCACAAACTACTATTGCAAGTCTGGGCATTGCTAGAACAGCGTGTGCTCATCTTCTGCCTTCAACAGTCGCCCTGCTCTGTGTTGTGGCTTCGTGCTGCAGAAGGGATCATTGGGCCTGGCATCGCACAGGGTTCAGGGCTGTGTGCGCCCCCACATCCCGGCCTGGTACAGGGATTGTTACAGCAGGTTAGGTTGAGTAGCATTGCTGGTAAAGGTGGAAATCATGATCGAGTTCTTTAAcataaaatctaataaaaatgcaaaaacataattGGTACCAAACAATTTCAAGTCATAAGCCCCAGCTGCAAAATACAAACTGGATTTACATTTGTATACGATACAACAGAAGATTTATACAAAGTGTTAAATACATGGAAATGTCttcaatttacatttcagaGATTGGTGGAGAGAAACTCTCCTCGCTCTGATTCAATTCACTAAAGAGCTTACATACATTCTCCTTAATCATTACGAATTGAGTGTATATAGTTATGAATGTATAGCTGAGGATCTGTTCAATAaaagactattttatttta

Function

GO: NA

KEGG:

id description
ko04070 Phosphatidylinositol signaling system
ko04138 Autophagy - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019873 True 3282 mRNA 0.49 17 77166 103648

Neighbor

gene id symbol gene type direction distance location
AMCG00019872 NA coding upstream 1903 48107 ~ 75263 (+)
AMCG00019874 NA coding downstream 136711 240359 ~ 270653 (+)
AMCG00019876 NA coding downstream 177693 281341 ~ 297312 (+)
AMCG00019877 NA coding downstream 281378 385026 ~ 418105 (+)
AMCG00019879 trim32,LOC107728008,LOC107564424 coding downstream 470110 573758 ~ 575695 (+)
AMCG00019885 NA coding downstream 1020886 1124534 ~ 1128690 (+)
G59289 NA non-coding downstream 115957 219605 ~ 220375 (+)
G59299 NA non-coding downstream 142264 245912 ~ 246217 (+)
G59304 NA non-coding downstream 164100 267748 ~ 267963 (+)
G59306 NA non-coding downstream 341984 445632 ~ 446858 (+)
G59351 NA non-coding downstream 828653 932301 ~ 1002892 (+)
G59305 NA other downstream 337950 441598 ~ 445530 (+)
AMCG00019884 NA other downstream 971168 1074816 ~ 1108996 (+)
AMCG00019920 NA other downstream 2858860 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 3137660 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 4720165 4823813 ~ 4856929 (+)

Expression


Co-expression Network