AMCG00019887 (brinp1)


Basic Information

Item Value
gene id AMCG00019887
gene name brinp1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 1874560 ~ 1889869 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019887
ATGATGTTGAGGCTCCTGCAGTGTCTTTCCTCCGTGCTGAAGGGCAGGGCATCGCTCTACcgctttacattttacatgcagCGTTTCTACTGGCGGCACAAGCTACCGAACCCTGTACAAACTTGGGCAAAACCAAAACTAAATCACTCTTCTCGTCTTCTCCTTGCAGGTCTGCAGGTCATTTTCCCCGAATACCTCCAGGAGAAGTTTGTGCAGTCGGCGCTGAGCTACATCATGTGCAATGGCGAGGGCGAGTACGTGTGCCGGAACAGCCAGTGCATCTGCCAGTGCGCCGAGGAGTTCCCACAATGCAACTGTCCCGTCACCGACATCCAAATCATGGAGAACACGTTGGTGGCCATGGCCGAGACCTGGGCGACGTCGTACAAGGACTTTGAGAATTCAGACGAGTTCAAGTCGTTCCTCAGGAGGCTGCCCTCGACACACTTCTTGCCGGTGAGCAGCGTGCACCTGCTCTGGGGGAACGACTGGGACCTGCAGGCACGATACCGGCTCCTCCAGAGCTCCCTGGAAGCACAGCGGCTGAAGATGCAACGCACGGCACGCAAACTGTTCGGCCTCAGCATCCGCTGCCACCACAATCCTCACCACCAGATGCCTAGAGAGAGATCCGTCTTGCAGTGGCTCAACCGGGTCCAGTCCTTCCTGTACTGCAACGAGAACGGCTTCTGGGGGACCTTCCTCGAGAGCCAGAGGACCTGCGTGTGCCACACCGGCATCAGTCTGTGCCAAAGACCCATCCCCTGCGTCATCGGCGGGAACAACAGCTGTGCCATGTGCAGCCTGGCCAACATCTCCCTGTGCGGCTCCTGCAACAAGGGCTACAAGCTGTACCGGGGCCGTTGCGAGCCGCAGAACGTGGACTCGGAGCGCAGTGAGCAGTTCATCAGCTTCGAGACCGACCTGGACTTCCAGGACCTGGAGCTCAAGTACCTGCTGCAGAAGATGGACTCACGCCTGTACGTCCACACCACCTTCATCAGCAGCGAGATCCGCCTGGACACCTTCTTCGACCCGCGGTGGCGCAAGAGGATGTCCCTCACGCTGAAGAGCAACAAGAACCGCATGGACTACCTCCACATGATCATCGGGCTGTCCATGAAGATCTGCCAGATGCGCAACAACAGCATCGACCCCATGTTCTTCGTCTACGTCAACCCCTTCAGCGGGAGCCACTCGGAGGGCTGGAACATGCCCTTCGGTGAGCACGGATACCCACGCTGGGAGAAGGTGCGGCTCCAGAACACGCAGTGCTACAACTGGACCCTGCTACTGGGCAACCGCTGGAAGACGTTCTTCGAGACGGTGCACATTTACCTGCGCAGCCGGGTCAAGGTGCCCACCACGCTGCGCAACGACACGGCGCAGGGGCCCGTGGACCTGTCGGACCCGGCCAAGAGGCAGATCTATATCAAGATCTCGGACGTGCAGGTGTACGGGTACAGCCTGCGCTTCAACGCCGACCTCCTGCGCAGCGCCGTGCAGCAGGTCAACCAGTCGTACACTCAGGGGACCCAGTTCTACTCTTCCTCCTCGGTGATGCTGCTTTTGTTGGACATCAGGGACCGGATCAACCGGCTCGCCCCGCCAGTAGCCCCTGGGAAGCCCCAGCTGGACCTGTTCTCGTGTATGCTGAAGCACCGGCTGAAGCTCAACAACAGTGAGATGATCCGAGTGAACCATGCGCTGGACATGTACAACACAGAGATCCTAAAACAGTCCGACCACCTGACTGCCAAGCTCTGCTGAGGAGCcgcttttatttttcctatctccttcttcttttctttttgctttttgatgtaaaattgaatttgtaaatgtaattattatacataaaaagagagaaagagagaggagaagaaagagatCTCTGAgttggaaagagaaaaaaaacgacaaaaaaaattaaaaaaaaaacttaagaaACGGAAAAAAATACGACTAAAACCATTTAACAAGACTGTATCATATTTGTCCGAGCATGTTTGTTGTTTCCTTTTGACGAacgtaaaagaaaaaaaagaaatgaaacatCTGGAGATCAAGAGGCCTTGATTTTactctgaaagaaaaaaggtacATCAAATACTGCCATTCTTAACcgagtaaaaataaatacaaactttttaaaaacttaCTAATAAAATGACATAAGAGTAGACCAGGTgatatatctttttattttagcaaaatgttttgtgaaaataaaatggggggaaaaaaaacaacaactaaaaaatctaaaagggaaggtttaatatgaataaattatgaGACTTCAAAATGTTGctacaacattattttatctACGTGTAGTGATATTAGAAAGCCATCATAGCACACGATTACTTTGTCACACAGACAACTCCTTACACAAACACGGCAATGCTGTGTCGGGAGAAACGCACTATTCAAATGTcgtctttaaaataaagacaccaTGTTCGGCTGTAGAAACTCAGACCTCCATTCaggatgtgtttgtttgtttaagctTTCATCTTTGTTGCCGTATGTAACTTGGACACGTACAATGATcagcgcatgtgtgtgtgtgtgtgtgtttgcgtgtgtctCTCCTGAACTCGCTCTCTCAGCCACCCGCGGCCGGACGCACACATTAAGGATTCCACCCACATCTCCAGCAGGTTCTTAAAGCCTGAATAAAACCCCGCGCGGTAGAGATGAACAATCGATGCGGCTTCAAAGCGCCGCCTCTGCGCATGAATCTTCGGGGTGGCTGAGGTGTCAAGGATGAGGAATCTTATCGCCGCACACAAATTAGGAATCTGATCGGCCAGCCTCACTGCACACAACACTGAGACGTATATATTTATAGAGAGATCAGCGTGGAAGGGCTGGGAGGAGGCTGGAGGCTTTGATCATCGTGCTGAGAATAATCAGGCCTTGTCCACTTACTCTCACGATCTCCGTCCAACAAGACAAGGAACAAgaaacgcgcacacacacacacacacacacacacacacacacacacatgttcctATGTGCCAAAACCCTGATGCTTCTCTCATGTTCTCATATTCCACttgtaccatttatttatttttgattatatttattttttataaatactaaCTGGTTGCTTGTTGATTCATCCATGCCTGCTTCACCGCCcgatatgattttaaaaactgtaccATGATGTATCTAGGTATCATTGAGTCCAAGACAGAAAGCTCTATTTACCCAGGCTTTTGAAACAgtgttgtgcgtgtgtgtatgtgtgagcgGACGGCACCCTCGCTGTGTTCTGTGAAGGGACCGTTTGCTCGTGCTGTAGTCGTTGCAGTGATGATAAAACTCCGGTCTGAAGGAATGGTTTCCAAAAGTGAATCTGTTACACTTCTAGAAAGCAaatgttgatgatgatggtgatgatgattgTTATGATATAATTAAGTGCCTGCTAACTATCCCTTTAACGCATCATTATGACAACGGGACATGGAAAGAGTTTGTCAGGATCTCAGCCAATGTGAGACACTAATAGACTGAAACGTTGCAATCTGATTAAAGCAGGAAAAcgaagagagagcgagagagagagagagactgtttgAGAGTCTGGGACGAGTGGCGGAGGGATATAGTCTACTGAatccatttcaaatatttaaatctttgtGGAAACAGTTTGAAGTAAAGCAG

Function

symbol description
brinp1 Predicted to act upstream of or within negative regulation of mitotic cell cycle and positive regulation of neuron differentiation. Is expressed in several structures, including fin bud; gill; heart; median fin fold; and nervous system. Orthologous to human BRINP1 (BMP/retinoic acid inducible neural specific 1).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 1 isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019887 True 3696 mRNA 0.49 4 1874560 1889869

Neighbor

gene id symbol gene type direction distance location
AMCG00019883 NA coding downstream 928671 944898 ~ 945889 (-)
AMCG00019882 NA coding downstream 1003664 869061 ~ 870896 (-)
AMCG00019881 LOC106563268 coding downstream 1281164 582350 ~ 593396 (-)
AMCG00019878 NA coding downstream 1393039 455460 ~ 481521 (-)
AMCG00019875 NA coding downstream 1634427 235518 ~ 240133 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding upstream 23572 1913441 ~ 1920755 (-)
AMCG00019889 NA coding upstream 215961 2105830 ~ 2135939 (-)
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding upstream 270309 2160178 ~ 2185195 (-)
AMCG00019891 gpsm1,LOC106910217 coding upstream 321808 2211677 ~ 2212773 (-)
AMCG00019892 gpsm1,LOC106563264 coding upstream 336935 2226804 ~ 2247160 (-)
G59414 NA non-coding downstream 212381 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 380587 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 477335 1389345 ~ 1397225 (-)
G59395 NA non-coding downstream 527081 1347246 ~ 1347479 (-)
G59390 NA non-coding downstream 589815 1284425 ~ 1284745 (-)
G59484 NA non-coding upstream 302465 2192334 ~ 2192547 (-)
G59485 NA non-coding upstream 305934 2195803 ~ 2221194 (-)
G59556 NA non-coding upstream 684935 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1600849 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1707336 3597205 ~ 3597760 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 288560 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1301733 535831 ~ 572827 (-)
G59505 NA other upstream 434419 2324288 ~ 2327415 (-)
G59530 NA other upstream 565042 2454911 ~ 2480799 (-)
G59545 NA other upstream 605030 2494899 ~ 2507020 (-)
G59712 NA other upstream 1141987 3031856 ~ 3034335 (-)
G59720 NA other upstream 1217932 3107801 ~ 3111347 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031699 brinp1 coding NC_007116.7 CM002889.2 71252856 ~ 71460556 (-)
grasscarp (Ctenopharyngodon idella) CI01000059_08947247_09020511 BRINP1 coding CI01000059 null 8947247 ~ 9020511 (+)