AMCG00019888 (brinp1,LOC107597955,LOC106563266)


Basic Information

Item Value
gene id AMCG00019888
gene name brinp1,LOC107597955,LOC106563266
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 1913441 ~ 1920755 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019888
GAGTTCGCCCGCTGGAAGGTGAGGAACACGGCCATCGAGAGGAGGGACCTGATCCGCAATCCTGTCCCGTTGATGCCGGAGTTCCAGAGGAGCGTGCGCCTGCTGGGGAGGAGGCCCTCGACCCAGCAATTCATCGACACGATCATCAAGAAGTACGGGACCCACATCCTGATCTCTGCCACACTGGGAGggGAGGAAGCTCTTACCATGTACATGGACAAGAGCAAACTGGACAGGAAGATGGTCAACGCCACCCAGAGTGTGGAGGCCCTGCACCAGCTGGCCTCGTCCTACTTCATCGACCGCGACGGGACGATGAGAAAGCTGCACGAGATCCAAATTTCCACCAACGCAATCAAGGTTCGAtttctctctcctgcactcTGTCTTCACATGCACACAGATAAGACCAGGTAG

Function

symbol description
brinp1 Predicted to act upstream of or within negative regulation of mitotic cell cycle and positive regulation of neuron differentiation. Is expressed in several structures, including fin bud; gill; heart; median fin fold; and nervous system. Orthologous to human BRINP1 (BMP/retinoic acid inducible neural specific 1).

NR:

description
PREDICTED: BMP/retinoic acid-inducible neural-specific protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019888 True 417 mRNA 0.57 2 1913441 1920755

Neighbor

gene id symbol gene type direction distance location
AMCG00019887 brinp1 coding downstream 23572 1874560 ~ 1889869 (-)
AMCG00019883 NA coding downstream 967552 944898 ~ 945889 (-)
AMCG00019882 NA coding downstream 1042545 869061 ~ 870896 (-)
AMCG00019881 LOC106563268 coding downstream 1320045 582350 ~ 593396 (-)
AMCG00019878 NA coding downstream 1431920 455460 ~ 481521 (-)
AMCG00019889 NA coding upstream 185075 2105830 ~ 2135939 (-)
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding upstream 239423 2160178 ~ 2185195 (-)
AMCG00019891 gpsm1,LOC106910217 coding upstream 290922 2211677 ~ 2212773 (-)
AMCG00019892 gpsm1,LOC106563264 coding upstream 306049 2226804 ~ 2247160 (-)
AMCG00019899 NA coding upstream 542881 2463636 ~ 2479709 (-)
G59414 NA non-coding downstream 251262 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 419468 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 516216 1389345 ~ 1397225 (-)
G59395 NA non-coding downstream 565962 1347246 ~ 1347479 (-)
G59390 NA non-coding downstream 628696 1284425 ~ 1284745 (-)
G59484 NA non-coding upstream 271579 2192334 ~ 2192547 (-)
G59485 NA non-coding upstream 275048 2195803 ~ 2221194 (-)
G59556 NA non-coding upstream 654049 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1569963 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1676450 3597205 ~ 3597760 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 327441 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1340614 535831 ~ 572827 (-)
G59505 NA other upstream 403533 2324288 ~ 2327415 (-)
G59530 NA other upstream 534156 2454911 ~ 2480799 (-)
G59545 NA other upstream 574144 2494899 ~ 2507020 (-)
G59712 NA other upstream 1111101 3031856 ~ 3034335 (-)
G59720 NA other upstream 1187046 3107801 ~ 3111347 (-)

Expression


Co-expression Network