AMCG00019889


Basic Information

Item Value
gene id AMCG00019889
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2105830 ~ 2135939 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019889
CTGCGTAGCCGGCTGACATAGCAAAACTAACCGTTCCCTTTCAAACGTCCACAGAAGCCCTGACCGCCTGCCAGCCTAAGGAACACAACTCTGACTCCTGGATCACCGTGATTGGAGAGGCGACGGGATGCTGGGGCAACTTTACTGATGCCAACGGCACGGAAGTTCACATCCTGACCCTGGAACTCAGTGAAAATGTGCCAATGCTAGAAAttaccatgaacattacaagtCCCACAACTCTGATTCTGAACAGCAACATTAATGCTACTATACTGGTCACTGCAAATCCACTTCTAAAAGAGATTCATcATTCAGCAAAActgattgtttatttacaaCCAGTAACAAAAAAGCAAGTGCAAGTCCCAGCCACAGACAATCTTTTAAACTGGGCCAAGCAGGAGTTTGGGGGAGTTACGTCTATGACAACAGTCTACGAGCCTGGCACAATCACATTTCATGGTGGCAAAGCTCAGGGTGGCTCAACAGAATGTGTGCCGCACTCCAGTATATTCCCAGCGACCCCCGTCACATTCACCTCTAAATATCAGTCCTGCTCTGACCAGCCACCCTCTCCGACACAGTCAGAAGTGCACATCCTCAACATACTGGATACCAGTGTGAATCTGAGGCGCATTTATCTGCACATCAGCTCCACCAAAGAAGTCAGTTTTATCCTGAGAAGCCCTGTCAGTGCAAGCTGGAATTTATATGGTGGAAGCAAGTTTGTGTCCAACACTGAAGTCTTCAttgaacaatttaattttactgcTCCATCAACTTTCAACCTCACAGATGACAACAGGGAACTTTGGGAATTTGCAAAGGACAAATTTTCAAGTGCATTCATCACCTCCTACAGTGAGATCTCAACTCATGGAAGAGTTTTGAGACTTTTCTTTAACAGGAAAGATGAAACATTGCCAACTCCAAGTAGCAGCATTGCCAGTTTACCTACTTTAACTACCAGCTCGGTTGAAAAGGGAGGCATTGGGATGCAGCTGTACCTCAACTCCGATTACACGGGTCCCATAGATGAGCAGACAAAGGTTAAGAGTGACCAGAAAATCTATGCAGAGATTACAGTTAAGGTTCATGGGGAGATTCCTGCCATCTTAAAGGTTACCAGTTGTTCTGTTCGTGCGAAAGCCCCTTGCGATGTGGTCAGGAACCTGCCCTTCCACTCTGAGCACTGCTCCCCAATGGTGTGTCCGTACAAGAAGAGGATCAGCTTCTCCTTCCACAATGTCCAGGAGCTTCCTGCAGTCCAATGGGAGGTGGAGTGCTCATCAGAGCTGTGTTTCGAGGGAAGGTGTGCAAAATTTCCACCAGCAAAGTCAAATCTGGAAGTCATCAAAACCTGTACCCCCTCCAAGCCGTGTTACGAGTTTGAGTTGCCGGCCGTCTTGGGAATAGCTTTCGGAGGATTCCTCATCGGGGTACTGCTCATCGGGGCGCTGTGGTACATCAAGGTTCGCACCGGCTATCCTGCTGGGCTGGACGTGGTCTCCAATAACAGCCACATTTCAGgATTCCCCTGTCCTTTGCTGAAAAGGCAGCCAGTGTCCCCCAACCCTTCACCGTCCGAAAACAGCAGTGCCAACCCCAGCATCGGCAGCACCCAGAGCACGCCAACCAGTAGCATGGCTTAGATTCAGCCATGGCCCAGGCGTCCATCAGCACAAGatgatgttttttatatttatatagggCACTTTTTTTGAGGTGACAGTGCCTTTGTAAAGAGCTTCACAGTCCACCACTCTCTTACTGGGAGTCCAAAGGGAGGACAGGCTAATCCAGCCTGACCATTCACTACCCAGCATCCGCACTCCTCTCTGGTGAAGCCAAAGACATAACTCAATGGAGACTcacaggaaaaacaaagcatatcCCTCAAGCACTAACAGGAAATTCATTGCATTCTTTCAATAAACCACGTCGCACCGACAGCAGCACCATAATAATCCCGAAAAGACAAAAgatgtacttttttttaacattattaggGACTTTTGTTTGCATCGTTGGCCACAACAACAGAACTTCGGAAATGTTAGCGCCAGCTTTTCAAAGCTGCCTAGCAACGGACAGGAAGTCAAACTTGGCTGACCGTTTTTACCGACAAagaacctttttttattattaatattgaaaaagaGGGTGGCTGGTAGCTAATCTTAGAGtaactcaaaataaaaatgtttaaaattaaatccccAATAAATTGATTTACGTCGGGAAATGAAAGCATCTTCAGTGTTGACCTGccaaattatttttagaaaacctCTACCTCTTTACTTGTGCAGTTACCTGATTGTGAAGTTTATGCTTGGCTTTGACAGCAAATCAAGGTCTGAATTCAGGTCTTTTTGGGGTTGAATCGTCTTTTATGGTTCAGACCTGGACACACACAAACCAGTGCCTTGGTCAGAGTATTGGTGTCCTCTCTGAGAAAACAATGTCAGTTCTTGCTGGGGACCGACAGAGAACACAGCCCTCTTCCAGTTCAGTCTGAACTATCAGCAAAAAACTAGTCAATCAACTTGGTACCTAAGCGACGTATTAAGGTTTTATGTCTAGTTGTCTTTTTAACAGATTGTAAATAACCATTACATGGACATTTGAGATTGAAAGAAACTGTTATAAGACCCTGATTCACCCCAAGCCAAAAATAACTGACCAGTATTTAGTCCGAATTCCCACAAAGTGTCCCCCGCACAATATTATGACTCTTTTCTAAAACAGCTCAGATGAACACCCAAATTCCTGCTGTAATATTACTAGGTTTCTAGCACAGTAATACTCAGTAGTTGAAATTGAGTGTAGTACAGAGCACTACTGTAGGTAGTTCAAAACCTTTAGCAGGAATATCATACAGATGTTGTTATTCCAACTCTTTCCCCCGATTTAgaatttgtgttgcatttacatTGTTCTAAAATACAATAACAGTTACTGACCAAGTATCAAATCCTCAAAAGGGGTATTTAGTAAGCAtcctgtgtatattttttacaagTTTAGCctaattgtttccttttatgTCAGACAATTAATGTGTGCTGGGGGACGTCTAGGAAAAAGGACTCCTCGAAATCCAAAGACCTAGGTTTTGATAGGTAACCAAATTAGTTTTTGATACTCATATCATATGATACTCTGCATAGCATAAAAGATgccccttattttattttatcccccCCACAACCCCTCCAAATATCAGccaagtactgtatatacagagtAAAAATGACCTACATATTTGGTCACCTAAACAAAAATGTAgctacttttatattttatgtgaaaGCTTTCCTATTGTCTATACTTTGTTTTGGGTGATTTGAAGGAATGTGTGAGTAtttgagtgcgtgtgtgtgtgtgtgcgtgtgcgtgcgtgtgcgtgtgtttgtgtattggtATGTGTGCACAGTGGTGGTAGACCggagaatgaaaaagaaatgaataatcAAGCCACTTGAGTTTGTgcaatacttttaaaacatactCTTATAAGTGAGTAACAGAATGTCTGAAGAGCTTATGTAGAAAGGGAACGCTATCCCCCCTCTGTTTTTCCTTCTTGCAGTGTCTTACTGTGACTGTGATTTGGCCGCACAAACATACTTCAAATTGGCGAACGCTGGGATTCCCAGCACGTGCTAATGTGAACGTTCAGTCTGTGGGAAAACGAATGCACACGATCAGGCCGCTGCTATGAAGGAGTGCAGTTGCTTTAATCGTGACATTTCTCACGCACTACAGATGAATAGGAATCAGCAGACAGACGCAGGGTGTTTGGAGCCTCTTCTCACGAGGTGAATGTAGAAGATCCTTAACCGTTTCATAGTCTGTTTACTTGCCTCTGCCACCAAAATCAAAAAGGCTGCCTGTAATGTATTGGCAACAGTTGAGTACCTTAACCAATCAAATCCACGATTCACGCACACATTAAAATCCTGGTTAGCGGTATCCAGactcatacatttttataaattatgtaaGGGGCAATAAACTGTGGATCAAATTAGGGGTACATCTGGGCTACGGTTCGAACGGGTGGAAAAGGGGATGCAAAAGTTTTGTTACACAACACAgttgaaaaaacacagatggaaAAAACCAAACCGCAGAATCAGAGATTTTATAATCTGGACCGTATGCTTTGGACAGGCACCGTCTGTCCTCTCGGGAGAGATACAGTACCGCATAATCAATgattcagttaaattaaatgcacgtttccttttttctcacAGAAATGCAGTATCTCAGTGGGGAAATGGTCAAGGAACACAAGCAGGCTAGACAGGCCCTCAGCTTGATTGCTCAGACTGGTCCAAAGTTATCAACCCATGTCTCGTGTGATAGGGAGGTCTTCCAAAACGTGTGCCAATTAGTTACGAAAACGAATTCAAAGtatcactttatttatatatatatatatatatatatatatatattgcaataataataatacaatgtattgGGTCATGCATAGCAAAATACAGTTGTGAGTGTTCACTGGAGAAAGCTTTTAACCTTTCATTGATCAAGGGCTAGTAATGTTTTAAGCTCCAGGGTCCAGTGGAATGATGCTGCTGCTTCTACCAGAATACAGTCTCGGTGTCCATTAACACTATATGTATAGCAAAggctgttttttctctctttcaatgGGGCATTATACCAAGGGGTATAAAACATCCAAACATCTTTAACTGGCTGCCTGTTTTATTTCCCAGCTGCTCCCCCGCTGTCTGATGTTTAAAAACCTTGCCACTGCAAAACCGCTAATTAGCGCTCACTCCTGGGCAACACAAACATGGCATTTGCTAAACTTTGGAGGTTTACAAACTCGGTTGTGAAAACACAGAGGGGCAGACAAATAACTCAGACAGGGAAGACAGCGCTGGGAACTCTCTCCCCGAAAGAAAATCGGTCTGTCCCGCTTTCTCGCTTCAAGCTGTACAAGAGATCACACTTCAGCTCTGATCTGAGCACTACAGGGACCTCCCACGTACTGCCTTTATGTTTTAGTTGCTCCCTGATCCTATTCATATTAcacttacttttattttgtatttctaatttatttattggccaAGCACCAGCACACACAATCAATACCCATAATCTGAAGTGGTTatactttgtatatatatagcacCCCGCAGAACcttgttaaacacacacatattgagAGGCGCAGTTCTCTgaagttatttttgtgtttatcaaTTAGGAAAATACAGTAATGTCCCAATCACATGGTCTGGACTAGCcgtatatatttatcaatactATGAATTGATTACCCTACTGTATCCATTAAAAACCAAATGGTTTACTCCCAGAGTCTAGCACATCTTATTATGAAAGACACTTCTGGAGTTGTGTAACTGTAACCTGTATTGTCTTCAACATGTGTGTTCTTTGTAAAGCCTGTAAATTATAAGTTGACCAAATTTAAATTTAGCAAATATtgttaatctgtttttgtttaaagtatATGTATGTTGTATATTAACTGTCTGAAATAAAAAGGAACTTAGTATAACTCATAAAAGACTTCTTATCTTACTATTGGGGAATGCTTTTTCATGGTCTGGCACAGAAGGAAATGCAATGCATGCTGCACACTGTaaacttcacacacacaatcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019889 True 5675 mRNA 0.42 12 2105830 2135939

Neighbor

gene id symbol gene type direction distance location
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding downstream 185075 1913441 ~ 1920755 (-)
AMCG00019887 brinp1 coding downstream 215961 1874560 ~ 1889869 (-)
AMCG00019883 NA coding downstream 1159941 944898 ~ 945889 (-)
AMCG00019882 NA coding downstream 1234934 869061 ~ 870896 (-)
AMCG00019881 LOC106563268 coding downstream 1512434 582350 ~ 593396 (-)
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding upstream 24239 2160178 ~ 2185195 (-)
AMCG00019891 gpsm1,LOC106910217 coding upstream 75738 2211677 ~ 2212773 (-)
AMCG00019892 gpsm1,LOC106563264 coding upstream 90865 2226804 ~ 2247160 (-)
AMCG00019899 NA coding upstream 327697 2463636 ~ 2479709 (-)
AMCG00019913 NA coding upstream 553963 2689902 ~ 2690317 (-)
G59414 NA non-coding downstream 443651 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 611857 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 708605 1389345 ~ 1397225 (-)
G59395 NA non-coding downstream 758351 1347246 ~ 1347479 (-)
G59390 NA non-coding downstream 821085 1284425 ~ 1284745 (-)
G59484 NA non-coding upstream 56395 2192334 ~ 2192547 (-)
G59485 NA non-coding upstream 59864 2195803 ~ 2221194 (-)
G59556 NA non-coding upstream 438865 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1354779 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1461266 3597205 ~ 3597760 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 519830 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1533003 535831 ~ 572827 (-)
G59505 NA other upstream 188349 2324288 ~ 2327415 (-)
G59530 NA other upstream 318972 2454911 ~ 2480799 (-)
G59545 NA other upstream 358960 2494899 ~ 2507020 (-)
G59712 NA other upstream 895917 3031856 ~ 3034335 (-)
G59720 NA other upstream 971862 3107801 ~ 3111347 (-)

Expression


Co-expression Network