AMCG00019891 (gpsm1,LOC106910217)


Basic Information

Item Value
gene id AMCG00019891
gene name gpsm1,LOC106910217
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2211677 ~ 2212773 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019891
AAGATAGGCCGTGACCCCTCCGATGAAGACTGCTTTTTTGACCTCCTCAGCAAGTTCCAAAGCAGCCGAATGGATGACCAGCGCTGCCATTTAGACGACCAACAGAACGGGGTGGAAGGGGCCACTTCTGCCCCCGTGTCCCCACTGGATGACAGGATGGACCCATCCTCGCTCATGACCTCTCCGCAGACGGAGGAGTTCTTCGACTTGATCGCCAGCTCCCAGAGCCGCCGGCTGGATGACCAGCGCGCCAGTGTCAGCAACCTGCCTGGCCTGAGGATCACCCAGAACAACCTGGGGCACCTCTGTGGGGACCCCGACCCCCAGGAGCCGAGCGATGACTTCTTCAACATGCTGATGAAGTGCCAGtcTTCTAGGATCGACGACCAGAGGTGCTCGCCTCCAGATCCCGGACCTCGGGCCCCCACAGTGCCGGACGAGGACTTTTTCAGCCTGATTCAGAGGGTCCAGGCCAAGCGCATGGATGAGCAGCGCGTCCACCTCCCCTCGGACGACCAGGACGAGTCCGACACAGAGCCGGGCCCCGAGGACTCCAGCTAG

Function

symbol description
gpsm1 Enables GDP-dissociation inhibitor activity. Involved in negative regulation of GTPase activity; negative regulation of guanyl-nucleotide exchange factor activity; and positive regulation of macroautophagy. Located in Golgi apparatus; nucleoplasm; and plasma membrane. Part of protein-containing complex. Colocalizes with Golgi membrane; cell cortex; and endoplasmic reticulum membrane.

NR:

description
PREDICTED: G-protein-signaling modulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019891 True 561 mRNA 0.62 3 2211677 2212773

Neighbor

gene id symbol gene type direction distance location
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding downstream 26482 2160178 ~ 2185195 (-)
AMCG00019889 NA coding downstream 75738 2105830 ~ 2135939 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding downstream 290922 1913441 ~ 1920755 (-)
AMCG00019887 brinp1 coding downstream 321808 1874560 ~ 1889869 (-)
AMCG00019883 NA coding downstream 1265788 944898 ~ 945889 (-)
AMCG00019892 gpsm1,LOC106563264 coding upstream 14031 2226804 ~ 2247160 (-)
AMCG00019899 NA coding upstream 250863 2463636 ~ 2479709 (-)
AMCG00019913 NA coding upstream 477129 2689902 ~ 2690317 (-)
AMCG00019914 NA coding upstream 492556 2705329 ~ 2705778 (-)
AMCG00019912 NA coding upstream 497189 2709962 ~ 2742168 (-)
G59484 NA non-coding downstream 19130 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 549498 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 717704 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 814452 1389345 ~ 1397225 (-)
G59395 NA non-coding downstream 864198 1347246 ~ 1347479 (-)
G59556 NA non-coding upstream 362031 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1277945 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1384432 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 1427265 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 1433266 3646039 ~ 3647334 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 625677 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1638850 535831 ~ 572827 (-)
G59505 NA other upstream 111515 2324288 ~ 2327415 (-)
G59530 NA other upstream 242138 2454911 ~ 2480799 (-)
G59545 NA other upstream 282126 2494899 ~ 2507020 (-)
G59712 NA other upstream 819083 3031856 ~ 3034335 (-)
G59720 NA other upstream 895028 3107801 ~ 3111347 (-)

Expression


Co-expression Network