AMCG00019892 (gpsm1,LOC106563264)


Basic Information

Item Value
gene id AMCG00019892
gene name gpsm1,LOC106563264
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2226804 ~ 2247160 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019892
ATGCCCACGGCGTACCCCCTCAGCGTGGCCGAGCAAGCCCTGTGCCGATTGGCTCACCGTGGCCCCCGGCCCAAGCCTCTTCTCCAGCCCCTTGGCACAGAGCTGTGGATCTACGTGCAGAAGACCCGCAGTAAGCACAAGAAAAGGATGGAGGCCTCTTGCCTGGAGCTCGCTTTGGAGGGAGAGAGGCTCTGTAAGGCAGGAGACTTCAAGGGCGGGACGGCCTTCTTTGAGGCCGCAGTGCAGGTGGGTACGGAAGACCTGAAGACCCTAAGTGCCATTTACAGCCAGCTGGGCAACGCCTACTTCTACCTGAAAGAGTATGCCAAAGCTCTGGAGTACCACCGGCACGACCTCACCCTCGCCAGGACAATCGGGGACCGCATCGGGGAGGGCAAGGCCAGTGGAAACCTGGGAAACACTCTGAAGGTCCTGGGTCGTTTCGACGAGGCGATCGTCTGCTGCCATAGACACCTGGACATCTCCCAGGAGCAGGGAGACAAGGTGGGTGAAGCTCGGGCGCTCTACAACATTGGCAACGTGTACCACGCCAAGGGCAAGACGCAGTCCTGGAGCTGTGCTCAGGACCCCGTAGACCTGCCTCTGGACGTGAGGGAGACGCTGCAGAAGGCCTCCGACTTCTACGAGATGAACCTGTCTCTGGTGAAGGAGCTGGGGGACCGGGCGGCACAGGGCAGAGCTTTCGGGAACCTGGGCAACACCCACTACCTGCTGGGAAACTTTGTGGAAGCCATCAAATTCCACCGAGAGGCGGCTGAGCGCAGAGCCTACAGCAACCTTGGCAATGCCTTCATCTTCCTCGGCCAGTTCAGCACCGCCACTGAGCACTACAGAAAGACCCTACAGCTCTCCAGGCAGCTGAAGGACCAGGTGATGGAGGCCCAGGCTTGCTACAGCCTCGGCAACACCTACACCCTGCTGCAGGAGTATGGCAGGGCCATCGACTACCATCTGAAACACCTGCTGATCGCACAGGAGCTCACCGACAGAGTGGGGGAAGGCCGGGCGTGCTGGAGTCTCGGGAATGCATACGTGTCTCTGGGCAATCACAGAGAGGCTCTCCACTTCGCAAGGAAACACATGGAGATCTCCCGGGAGATCGGCGACCGCAATGGGGAGTTGACAGCCCGGATGAACATGGAGCAGCTGATGGATGCCCTGGGGATGTGCGAGGGTGACCTGTCATCTTGTGGATCCGAGTTTGAGGCCCAAGGAGCCAGGCCGAAGCTGAGCAAGAGGAACAGCATGGACAGCTTGGACCTGTGGAAATATCCCTCAGAAAAGGAACAAAACGGCGACAGCCATCACTTGGACTCGGACCTGTCGAGACGGACTCAGAACCACCTGTCTGGGCCGATCAGAAGGAAGGGTTGTGCTGATGGGCAATCGCTGGACGAGAGACAGTGGCTGGACTGCCGGGCCTCACCAGTCGACACCGATGACATCAGACTACAAGTGGCACCACCTGTGAGTCTCAGTCCGCCGGTCGAA

Function

symbol description
gpsm1 Enables GDP-dissociation inhibitor activity. Involved in negative regulation of GTPase activity; negative regulation of guanyl-nucleotide exchange factor activity; and positive regulation of macroautophagy. Located in Golgi apparatus; nucleoplasm; and plasma membrane. Part of protein-containing complex. Colocalizes with Golgi membrane; cell cortex; and endoplasmic reticulum membrane.

NR:

description
PREDICTED: G-protein-signaling modulator 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019892 True 1512 mRNA 0.60 11 2226804 2247160

Neighbor

gene id symbol gene type direction distance location
AMCG00019891 gpsm1,LOC106910217 coding downstream 14031 2211677 ~ 2212773 (-)
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding downstream 41609 2160178 ~ 2185195 (-)
AMCG00019889 NA coding downstream 90865 2105830 ~ 2135939 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding downstream 306049 1913441 ~ 1920755 (-)
AMCG00019887 brinp1 coding downstream 336935 1874560 ~ 1889869 (-)
AMCG00019899 NA coding upstream 216476 2463636 ~ 2479709 (-)
AMCG00019913 NA coding upstream 442742 2689902 ~ 2690317 (-)
AMCG00019914 NA coding upstream 458169 2705329 ~ 2705778 (-)
AMCG00019912 NA coding upstream 462802 2709962 ~ 2742168 (-)
AMCG00019911 rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986 coding upstream 525409 2772569 ~ 2781304 (-)
G59485 NA non-coding downstream 5610 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 34257 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 564625 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 732831 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 829579 1389345 ~ 1397225 (-)
G59556 NA non-coding upstream 327644 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1243558 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1350045 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 1392878 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 1398879 3646039 ~ 3647334 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 640804 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1653977 535831 ~ 572827 (-)
G59505 NA other upstream 77128 2324288 ~ 2327415 (-)
G59530 NA other upstream 207751 2454911 ~ 2480799 (-)
G59545 NA other upstream 247739 2494899 ~ 2507020 (-)
G59712 NA other upstream 784696 3031856 ~ 3034335 (-)
G59720 NA other upstream 860641 3107801 ~ 3111347 (-)

Expression


Co-expression Network