AMCG00019895


Basic Information

Item Value
gene id AMCG00019895
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2484957 ~ 2488944 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019895
CGGCTCTTGGGTTCTCGTCAGAGCTGCGCAGATGTGACGTCACGCAGCAGCCCTCGAAGAAGGCGCAGGTCTGCGGAACTGCGCGCACAACTGCGCAGAGGACGCGCCCAATGGAGACTCGGGAGCCGGGCGCACAGGATGACGCGGGCCGAGCACAACACGGCTGTCTCACATGTCACTGCGGGACAGGGCTGCCTCTGCACGGAACACACGCACCGCGCCGCTCCGGGCCGCATCGGCTGCGATTCACGGCATCATCTCAGATGTAGGGGGCTGCGGCTCCACCCTGCCGCCCTGACCGCCGCCACCTCCTTCGCCCGCCCGCCCCCCAGCCATGGCCAGCGCGGCCCCCCGGTTCACGTGGTGTGTGTGCCGCAAGCACAAGATCCCCTCGAAGGACACGCATGAGCTGTGCCTGCACTGCCTGGGCATCCAGCACGCCAAGGAGGCCGTGCTCGAGTACGGCAAGTGCCCGCATTGCGCCAAGCTGGACTGGAGCACCTGCATCAACCGGCTCACCAAGGTGCAGGAGGTGATCCACCGCGAGAGCCAGCAGAAGAAGTCCGAGGCGGCGCTGTCCGAGCCCGCCAAGTCCGCCGCCCTCTCCCAGAGTGGTGGGCCCCCGGCGGCCAAGGAACTGGTGCCTGTCCAGCAACCGGCCAACGCCTTCCCCACCACCTCGGTGCAGGCCTCGGCCCTCCCGGTGATGTTCACCATCCTCTCCCCGTCTCCCGCCCCGCAGGCCTCGAACCCCAGCATGGCAAACACCGTGCACCCGGCTCTGGTGGCCGAGCAGCAGTTGACTTTCCCGTCTGTTCTGCCGCCCAGCTCTCACCCGGGCTCCCACCAGCGCAAGAGGAGGCACTCTCCGGGGCGCCGGTCCCGCTGCTCCAAGCACTCCCGGCGAAGCCACGGCCACCGGCGCCGGCGCTCGCCCTCCttctcctcgtcctcctcctacTCGAGCACCTCGGACTCCTCCCGCTCCTCGGCCAAGGAGAAGAGGTCCCGCCTGGTGTCCTGGATGTCGGAGAGGCTGAAGAAGCAGCAGGAGCAGCTCTTGGAGATGGTGCACCAAAAGATGGAGGCGCAGCAGCAGACCATGCAGGTACAGTGGAGCCTGCTGGAGAAGCGCATCGAGGTCCTGGAGAAGAGGAGGCTGGAGGCGCCGGCGGAGTCCGCCGTGAGTCAAGCGCCACCCCTCGACTCGGCCCAGGCTTCCATGTCCACCCAGGAGGAGCGTCAGGACGCGGCACTCGACCCACATCACAGAGACTGGTCGGGCCCCTCCACGGACGCCCTGGTCACCATGCCGTCGAGCTCGGCGGTGGTGAAACAGGAAGAGGAGCCCACGTCCATCTCGGGTGAGGTGAAGCTGGAGGAGAACAtggagggcgagggcgaggacGCGTCTCTGCTTCCCGAGGTGCCGCTGACTATGCAGGAGCTCCTCATGGCCACCGAGCTGCAGGGCCTCATCAACCGCGCGGCCAAGTACCTGGGCATCAACTTCCCCGGCACTCCGGCCAACCTGACCTCGCCCGACCCCACCATGGTCCCCGAGTTCGAGAACCTGGTCCAGAGCACGTGGTCCAACCCGGCCTGCGCCCGCCCCTTCAGGACCGTCCATTCCAAGATGTACCGCCTGCACGAGTGCCAGGCCCCGGCATACGATCGCATGCCGCAGGTGAACCGCTTCATGTCGGCCATCTTCCAGGCCGTGAAGCCCTCGGAGAACAAGGAGGCCTCGGCGCCGGCCAAACGCTGGCGCTTCACCGAGGCGCTGGCCGAGAGGGTCTACCAGACGGCCGGCATGCTGGCCAGGACCGCCAACTACCTGCGCTACCTGTCGGACTACCAGAAGCGACTGCTGGTGGAGATCACGGAGGACAAGCCTGCGGTGCGCTTCGTGGCTGTGCTGAACGAACTGAAACTCATCGCGCAGTTCACGCTGCAGCTCTCCTCGCACCAGGCCGAGCTGTCCGGCAGGGTCATGGCATCTTCGGTGGCCATCCGGCGGCAGGTGTGGATGGCCAAGACCAATTACACGGACGCTTTGAAGGCCACAGTGGCGGACCTGCCCTTCGTGGTCAGCCACACCTTTGGGACGGGCGCGGACGGTGCCGTGAACAGCCTGGTCTGCAAGCAGGAGTTACAGTGAGAGTCCCGGCACTTTCCCGGTCTGATCTGGTGGGTTTTATCCAGTAGAGGAACAGAGTGGGAGTAAAAAACTTGGATCTTGATGGTTTTAGAAGAAACGGGGACACGGACGACCACAACAGCTGACTTTATCAAAAGTAGTTACAGAGCATTTTGTGTCAAAGCCAAAATAAGCTAAATCAGTGAAGTCCAAAGAGCGGTGGGTCGAAATTCGTCGAGGCAGAAATGATTCCAGAGCCGTTCGTTAACAGCCTATTAGACACGGATCTGATAGGCTGTTACTAATAGGcacctgtgtgtgagtgtgtctgtgtgtgtgtagatattgGGGGACAAGTGGAACAGTTCATTTTAACCAGCAAACCAACTACGTGAAGatgaaatgttgtttaattaaCAAGGTCCAAGcagattgaaaatgtttttattgcagtggGGGGTTCTAGGATCTTgggatgttttgtattttttgtatacaagttttttgtttgttttcttaagaaaaGGCCGTTTTGAACAGGTTGAGATTTATTGTCCGAGACGATTGAACAAGGTTGTCGTCCGGTTTTGTGAACGCCCTgccctgtgttgtgttgtgagcTTCATAGTGGTTGATCTATTGCTGCTTTTTGTATTGAAAGAAAGTAAGTGTTGTTACCTTGTTTCTCTTTGGATGGTACGGTTTGGTAGgccacatctttttttttttttttttttttagatgtgtATTTTT

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006281 DNA repair biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019895 True 2893 mRNA 0.60 2 2484957 2488944

Neighbor

gene id symbol gene type direction distance location
AMCG00019897 NA coding upstream 998 2481905 ~ 2483959 (+)
AMCG00019896 NA coding upstream 30186 2443251 ~ 2454771 (+)
AMCG00019898 cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262,LOC106565885 coding upstream 68356 2414864 ~ 2416601 (+)
AMCG00019893 lhx3 coding upstream 133934 2340788 ~ 2351023 (+)
AMCG00019894 NA coding upstream 157622 2274379 ~ 2327335 (+)
AMCG00019900 surf4,LOC103376134,LOC105890423,LOC101465012 coding downstream 9004 2497948 ~ 2509657 (+)
AMCG00019901 ass1 coding downstream 33584 2522528 ~ 2544749 (+)
AMCG00019903 NA coding downstream 74010 2562954 ~ 2564398 (+)
AMCG00019902 NA coding downstream 78872 2567816 ~ 2571717 (+)
AMCG00019909 NA coding downstream 122750 2611694 ~ 2617930 (+)
G59467 NA non-coding upstream 303888 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 317517 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 321353 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 450163 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 687816 1796926 ~ 1797141 (+)
G59557 NA non-coding downstream 94750 2583694 ~ 2634130 (+)
G59578 NA non-coding downstream 226584 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 298966 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 336647 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 394770 2883714 ~ 2885416 (+)
AMCG00019884 NA other upstream 1375961 1074816 ~ 1108996 (+)
G59305 NA other upstream 2039427 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 473564 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 752364 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2334869 4823813 ~ 4856929 (+)
G60137 NA other downstream 2866828 5355772 ~ 5361863 (+)
G60132 NA other downstream 2869520 5358464 ~ 5359365 (+)

Expression


Co-expression Network