AMCG00019899


Basic Information

Item Value
gene id AMCG00019899
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2463636 ~ 2479709 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019899
ATGATCTCCCCATCCCCGCAGCCCGGCAGCGTTGCAGAGCAGGAGACCCGGACAGACGCCCGTGCTTCAGTGTCCGTCTCAGGAGAGGAGATGAAGTTCGCCGAGCACTTGGCTTCTCACGTCACCCCAGAGTGGAGGAAGCAGTACATCTGCTATGGGTCGGATCGCAAGGTGAACTTTGCCGCGATGGCAGACTGCAGATACCCTACTGTCCTTGAGTGGCAACACAGGTCTCTCCAGGAGGCTTTCTTCCAGATGTGTGACCATGAGCTGGCCAAGGTCAATCTCTTCTACTCTGAAAAGCTGGCTGAGGTGCAGAGGAGGCTGGCCGCAGCGAAGGCTGAGATGGAGTCAGCCCGGGAGGAACAGAGAAGGAAAACTCCTGGTACCAAGACCAGACGGTTTCTGAGGGCCTACAATAAAGCTGGCAAACACAAGACCTTGCAGGACCTCAAACTGGCCTTCAGTGAGTTGTATCTGAGCTTGACCCTGCTGCAGAACTACCAGGAGCTGAACTACACCGGCTTTTGTAAGATCATAAAGAAGCACGACAAACGCTTTGCATCGGTGCGTGGCCTGGCCTGGCGAACAGACATCCTGGACGTCTCCTCTTTCCACACCAGCAAGAAAATCCCCCAGCTGGTCGCCGAGGTGGAGtcacagatgtgcgaGCTGGAAGGGGGAGACCGCGAGAGGGCGATGAAGAGGCTGCGTGTGCCACCCCTGGGGGCAGAACAGCCCGCCCCCGCGTGGACCTTGTTCCGGGTGGGGGTGACCTGCGGACTCCTGCTGGCCCTCCTGTCTCTCATCGGGCTTCGGGTCTTGCAGGCACCCGACTGGTCACTCCTGGGGTCTTTGCTGCGGTTCTACAGGGGCGGCTTCCTGTTGATTGAGTTTCTTTTCCTGCTGGGAGTCAACATCTACGGCTGGAAGCGGGCAGGGGTCAACCACATCCTGATCTTTGAGCTGGACCCCAGGAAGCACCTGTCTCATTACCATGTCTTGGAGTTGGCAGGGACGCTGGCTGTGTGCTGGTGCACCAGCGTGCTGATGTGCCTGCACAGTCCCCTGGCTCCGATCCCCCTGCAGCTGAACCCCCTGATCTTCTACGCCTTCaccctcctgctgctgctcaaCCCCACGTCCACCTGCTACCCCCATGCCCGTCGCTGGCTCCTCACACTGCTGCTCAACAGCCTGAGTCCCCTGTTCCTGGATCTCTGGTCCCTCCTCTGCTTCTACGTCTTCGAGGTCAACTGGACGGACCTCGAGGCCTTGAACACACCCCCTGCAGAGAGGCTGGACTGTGGGCAGTACTCCCCAGGCCTGACCTGTGCGATTCAGTGCTTCCCTCCCTGGCTGCGGTTTGCCCAGTGTCTGCGGCGCTTCTGGGACAGCGGGAACACTGGGCCGCACCTGCTGAACGCGGGCAAATACTCCACCGTGTTCATCATGGTCACCTTTGCCAGCCTCTACAGCGTGGCCACAGAGCGCCCCCAGCTGGCCCCGGGGGTCAAGCCGTACCTGTACCTGTGGGCAGTAGCCACCTGCATCAGCGTCCTCGTCACGGTGAGCTGGGACCTGCGCATGGACTGGGGGCTGCTGCGGGGGCCCAGTCTGCTGAGGGAGGAGACCGTGTACGCGCAGCGGGCCTACTATTACTGCGCCATGCTGGCTGACGTGCTGTTGAGAGTCTCATGGGCCATCAACATCATCTTCGCCCAGATGAGGGACTCTGATGCTGCCATCGTGGTCACCAGCGTCCTTGCCCCCCTGGAAGTCATCCGaCGCTGCGTGTGGAATTTCTTCCGGCTGGAGAACGAGCACCTCAACAACTGCGGTGAGTTCCGCGCAGTCCGGGACGTCTCCGTGACCCCGTTCAGCCCCGGGGGCCACGCCGCCCTGGAGTGCATCATGGACAGCGAGGACACGGCCAGGGATCATGGGAGAAAAGCTACCAGGAGGACCCTCTTTTCCATCACTCGTCTGAGAGCCAGACCCAGGGAAGTGAAGCTGTCCATGGAGGGGACTGAGGAGGAGTCCCTAATGCACCAGTAA

Function

GO: NA

KEGG:

id description
K24195 XPR1, PHO1; xenotropic and polytropic retrovirus receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019899 True 2058 mRNA 0.60 16 2463636 2479709

Neighbor

gene id symbol gene type direction distance location
AMCG00019892 gpsm1,LOC106563264 coding downstream 216476 2226804 ~ 2247160 (-)
AMCG00019891 gpsm1,LOC106910217 coding downstream 250863 2211677 ~ 2212773 (-)
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding downstream 278441 2160178 ~ 2185195 (-)
AMCG00019889 NA coding downstream 327697 2105830 ~ 2135939 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding downstream 542881 1913441 ~ 1920755 (-)
AMCG00019913 NA coding upstream 210193 2689902 ~ 2690317 (-)
AMCG00019914 NA coding upstream 225620 2705329 ~ 2705778 (-)
AMCG00019912 NA coding upstream 230253 2709962 ~ 2742168 (-)
AMCG00019911 rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986 coding upstream 292860 2772569 ~ 2781304 (-)
AMCG00019919 stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899 coding upstream 331642 2811351 ~ 2825112 (-)
G59485 NA non-coding downstream 242442 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 271089 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 801457 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 969663 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 1066411 1389345 ~ 1397225 (-)
G59556 NA non-coding upstream 95095 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1011009 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1117496 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 1160329 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 1166330 3646039 ~ 3647334 (-)
G59505 NA other downstream 136221 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 877636 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1890809 535831 ~ 572827 (-)
G59545 NA other upstream 15190 2494899 ~ 2507020 (-)
G59712 NA other upstream 552147 3031856 ~ 3034335 (-)
G59720 NA other upstream 628092 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 686528 3166237 ~ 3185965 (-)
G59806 NA other upstream 1000073 3479782 ~ 3480109 (-)

Expression


Co-expression Network