AMCG00019901 (ass1)


Basic Information

Item Value
gene id AMCG00019901
gene name ass1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2522528 ~ 2544749 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019901
ATGACAAACGTGCTCTTCCTTCTCCGTCTGGAAACCCCATCTCATCTGCCGTTCCTGTCCTTGTCTGTTTCCTCCACAGACATCATGTCCAAAGGCACCGTAGTCCTCGCCTACAGCGGCGGTCTGGACACCTCCTGCATCCTGGTGTGGCTGAAGGAACAAGGCTATGATGTCATCGCCTACCTGGCCAACATCGGGCAGGACGAGGATTTCGACGCAGCCAGAAAGAAGGCAGAGAGTCTCGGGGCCAAAAAGGTGTTCATCGAGGACCTGCGCACAGAGTTCGTGGAGGAGTTCATCTGGCCGGCGGTCCAGGCCAACGCCATCTACGAGGACCGCTACCTCCTGGGCACCTCCATCGCCCGGCCCTGCATTGCCCGGCGCCAGGTCCAGATTGCCCAGCAAGAGGCCGCCCAGTTTGTCTCCCACGGGGCCACTGGCAAGggtaaTGATCAGATCCGGTTTGAGCTCACCTGCTACGCGCTCTACCCTGAGGTGAAGAAACACGGCATCTCTGTGCCCGTCACCCCCAAAGCGCCCTGGAGCATGGACGCCAACTTGATGCATATCAGTTACGAATCTGGGATCCTGGAAAACCCCAAGAATCACGCGCCGGCCGACCTTTACCAGATGACCACCAACTCTGCGGACAGTCCGGCCTCCCCAGACGTGCTGGAGATCGAGTTCTCTAAAGGTGTGGGGGcgagcgtgtgtgtgtctgtcagtgtgtgggaAGCCACCGCTCAGCCACTGTCGAAATTGTCTTCCAACGGCATGAAGGAAAGGGGTGACTGCCTGTCCTCCCTGGTGACCGAGGCGAGCGTTGGCTTCCCCACCCGCGGCAGAGACAGTCAATCGATTGATCACGCGCTGCTCCGTCGTACTGCCCCCCCAAACTCCACACATCGGGACACCCACCCGGTGACCGCATTCCTGCAGAGACGGAGGGGGCTCGGGGCCAGGAAACGCAAATTCATTATCAGGTCTGTGTTGGGGGACGGCATGTGTAATGAGAGTTTAGTGGCGGCGTTGGAGGAAATCCTGGCCCGAGGGGACGGGACTGTGAGCTCCCAGGATTCGACACTGATTAGCCAGTGGGCTGGAAATAGTCGCTGCCCTGAGGGGTTCAGCTGGGTGCTTCCAGGGGGGTATCTGTGTGGGGGACCCGGGCAGAGGAGGGATGAGAGAGGGGAGGCTTTATTCCTGTATTCAGCTCTTAACACTGCGCTAAGGAAGGAGGCACTGCAACTGGGCGTCTCTACATCTGGAGACGTCTGGACAGGTTCAAAAccggaggagagagggagggaggggggaaaggagagaagaagagaagagagagagaggaaaaaaaaaggccttCTGATCCATATTAATAGACGCGGCATGGGGAGCGAGGAAAGGCCGGGGTATCTGTGTGCTGCGCCGGCAGGGAGAGCGGGGGAGAGggtgcgggggtggggggtttctctctctcttttgacCCCCCTCCCACCACCAGTCCCTCCGCTGCTCTTTTTATCGCCCGTTTCGTACTATTAA

Function

symbol description
ass1 Predicted to enable argininosuccinate synthase activity. Predicted to be involved in arginine biosynthetic process; argininosuccinate metabolic process; and urea cycle. Predicted to act upstream of or within cellular amino acid biosynthetic process. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Is expressed in several structures, including DEL; ball; endoderm; forerunner cell group; and liver. Human ortholog(s) of this gene implicated in citrullinemia; classic citrullinemia; hepatocellular carcinoma; and melanoma. Orthologous to human ASS1 (argininosuccinate synthase 1).

NR:

description
PREDICTED: argininosuccinate synthase

GO: NA

KEGG:

id description
K01940 argG, ASS1; argininosuccinate synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019901 True 1542 mRNA 0.59 14 2522528 2544749

Neighbor

gene id symbol gene type direction distance location
AMCG00019900 surf4,LOC103376134,LOC105890423,LOC101465012 coding upstream 12871 2497948 ~ 2509657 (+)
AMCG00019895 NA coding upstream 33584 2484957 ~ 2488944 (+)
AMCG00019897 NA coding upstream 38569 2481905 ~ 2483959 (+)
AMCG00019896 NA coding upstream 67757 2443251 ~ 2454771 (+)
AMCG00019898 cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262,LOC106565885 coding upstream 105927 2414864 ~ 2416601 (+)
AMCG00019903 NA coding downstream 18205 2562954 ~ 2564398 (+)
AMCG00019902 NA coding downstream 23067 2567816 ~ 2571717 (+)
AMCG00019909 NA coding downstream 66945 2611694 ~ 2617930 (+)
AMCG00019908 fubp3,LOC106566971 coding downstream 76221 2620970 ~ 2631665 (+)
AMCG00019906 NA coding downstream 87496 2632245 ~ 2636245 (+)
G59467 NA non-coding upstream 341459 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 355088 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 358924 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 487734 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 725387 1796926 ~ 1797141 (+)
G59557 NA non-coding downstream 38945 2583694 ~ 2634130 (+)
G59578 NA non-coding downstream 170779 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 243161 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 280842 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 338965 2883714 ~ 2885416 (+)
AMCG00019884 NA other upstream 1413532 1074816 ~ 1108996 (+)
G59305 NA other upstream 2076998 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 417759 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 696559 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2279064 4823813 ~ 4856929 (+)
G60137 NA other downstream 2811023 5355772 ~ 5361863 (+)
G60132 NA other downstream 2813715 5358464 ~ 5359365 (+)

Expression


Co-expression Network