AMCG00019904 (exosc2,exos2,LOC106566956)


Basic Information

Item Value
gene id AMCG00019904
gene name exosc2,exos2,LOC106566956
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2658045 ~ 2663160 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019904
CAACAGCACTGAATCACAGCTCCTGGTCTCGAAGAAACGCAGCGACGTGCGGGGCGGGGGTGCGCGGCGCTGCGTGCGCTTCACACGTGTGAGGCCGCCGACGTCATCAAAGAGCGAcgcggacacacacacactcgggGCAAGATGGCGGTGGACATGCGATTGCCGAGCGCTCGGGAGCGGGCCGCGGACTCCCTGTCTGCTGCCGAGGGGAGACACCTGGTCGCCCCTGGGGATGTCATCACCACAGACACGGGCTTCATGAGGGGCCATGGGACCTACATGGATGAGGAGAAGCTGACCGCCTCGGTGGCCGGAGAGGTGGAGCGGGTCAACAAGCTCATCTGTGTCCGACCTCTGAAGACCAGGTTCAACGGAGAGGTCGGGGACGTGGTGGTCGGCCGGATCACAGAGgTGCAGCAGAAGCGCTGGAAGGTGGAGACCAATTCTCGTCTGGACTCGGTCCTGTTGCTGTCTGCAGTCAACCTCCCGGGGGGGGAGCTGaGGAGGCGATCGGCAGAGGATGAGCTGACCATGCGGGACTACCTGCAGGAGGGAGACCTCATCAGTGCGGAGGTGCAGTCGGTGTTTGCGGACGGGGCGCTGTCTCTGCACACCCGCAGTCTGAAGTACGGCAAGCTGGGCCAGGGGGTGCTGGTGCAGGTGTCCCCCTCCCTGGTGAAGAGGCAGAAGACGCACTTCCACAACCTGACCTGTGGCGCCTCGGTCATCTTGGGCAACAACGGCTACGTGTGGCTGTACCCCACCCCCGGGCAGCAGGACGAAGAGATGGGGGGCTATTACACCAGCCTAGAGCCGGTGTCCCTCATGGACAGGGAGGTGATCTCCAGACTGAGGAACTGCCTGCTGGCTCTCTCTGCCCACAAGGTGCTCCTGTACGACACCAGCCTGCTCTACTGCTACGAGGCGTCGCTCTGCCACCAGATCAAAGACATCCTGAAGCCGGAGGTGATGGAGCAGATTGTAATGGAGACCCGGCAGCGGCTGGCCAATCAGGAGGGGTAGAGGCGGCGGTGGGGGGAGCCCGGCACTGCAGCCgatccccctccctctccctgccgGGGCCACGCAGCCCGTCACCGCCGCCTCCCCGCCCGAGCCCCCGTCACGCCCAGACAACGACCGGACGGTGGAGCGGCAACCTGACGCCGCACCGTCCCTCTGAAGAGTCTGACCGTGCCCAGCTGAGCTCGGTCCGAAGTCCGCTGGCGTGTCACGGGGAAGCGTGGGAATCTGCGGCTGTGTCGGTCAGCGCTGTGCCGGGACCCTCTCGGCTGCAGCAGTGACTTGCTCCTGTAGTGGAGGAAGCAACGTTTATATCTGACGCTGTctttattgtatatttctaaGGAGTAGTTGTAAATCTGAATACCTGCGGAGGTCTGTGTTGCATGTGTGTCCCGTCGCTGAGACGGGGAAAGACCCTCGACTCCGGCCTGACCCGAAATCCAGACCATCCGGACGCTCGGACACGTTGATCTCGCCTCGCACCCGTTGCTGTTGGTGCTTTGATAGATATGAAGACGACGCCCATTTCGTGAGCTGTGCATTAGTGTCAGATTAATCCTTTCTGCTCAGAGATGCGTCCAGAACAGACGTCGGCAGTTTAGTCGCCTCGGCACGTCGAGATGTTCCATCGTTTACACTTCCTCAGATTAACTAGtaatagaaatgtatgtattcaaatgCACAGCTACTCCTgcgaaatataaaatgaaactcAGATATAAATGGGTCACCTGAACGTGCGCAAACTCGGCTTCGTGCCACAAAACTGGGAGAAGAAATACTGGAGCTGATTGCCGGCAATTGAGTAGcaattgtgatgtatttttaacaaacctgttttctgcattttcaatttcttcCTGAATAAACGATCAACGTGATCAAAGACTGCACTCTGTGAGTCGGAAAAACGCAATCAGAATCACTGCATCACCAACGTGATCCACCGATGACttttatatgcatttcagaaaccataaaaacacatttataaataaaaa

Function

symbol description
exosc2 Predicted to enable RNA binding activity. Predicted to be involved in RNA metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Is expressed in immature eye; midbrain hindbrain boundary; and optic tectum. Orthologous to human EXOSC2 (exosome component 2).

NR:

description
PREDICTED: exosome complex component RRP4

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0000178 exosome (RNase complex) cellular_component
GO:0004527 exonuclease activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03679 RRP4, EXOSC2; exosome complex component RRP4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019904 True 2030 mRNA 0.58 9 2658045 2663160

Neighbor

gene id symbol gene type direction distance location
AMCG00019905 prdm12b,LOC107688643,LOC105030201,LOC106587007,LOC107731029,LOC108423597 coding upstream 2012 2650937 ~ 2656033 (+)
AMCG00019906 NA coding upstream 21800 2632245 ~ 2636245 (+)
AMCG00019908 fubp3,LOC106566971 coding upstream 26380 2620970 ~ 2631665 (+)
AMCG00019909 NA coding upstream 40115 2611694 ~ 2617930 (+)
AMCG00019902 NA coding upstream 86328 2567816 ~ 2571717 (+)
AMCG00019907 NA coding downstream 3545 2666705 ~ 2670013 (+)
AMCG00019910 NA coding downstream 79541 2742701 ~ 2768063 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding downstream 127613 2790773 ~ 2810001 (+)
AMCG00019917 NA coding downstream 189049 2852209 ~ 2866964 (+)
AMCG00019915 barhl1b,LOC107708351,LOC107595696,LOC105902520,LOC107556939,LOC100712077 coding downstream 206545 2869705 ~ 2876818 (+)
G59557 NA non-coding upstream 23915 2583694 ~ 2634130 (+)
G59467 NA non-coding upstream 476976 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 490605 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 494441 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 623251 2034561 ~ 2034794 (+)
G59578 NA non-coding downstream 52368 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 124750 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 162431 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 220554 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 368718 3031878 ~ 3034341 (+)
AMCG00019884 NA other upstream 1549049 1074816 ~ 1108996 (+)
G59305 NA other upstream 2212515 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 299348 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 578148 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2160653 4823813 ~ 4856929 (+)
G60137 NA other downstream 2692612 5355772 ~ 5361863 (+)
G60132 NA other downstream 2695304 5358464 ~ 5359365 (+)

Expression


Co-expression Network