AMCG00019906


Basic Information

Item Value
gene id AMCG00019906
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2632245 ~ 2636245 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019906
ATGGCAGGTTTTACCGTCAAGTCTCGACCTGCTAATggccagtgtggctttggcacACAGTCGGCAAGAGTCACGCCATCCTCGGAGCAAAGCCAAGCCCAGAGCACAGGCCCTGACTACAGCAAGGCATGGGAGGAGTACTACAAGAAACAGAGTAGGTGTCGGGAGGAGCTCTGGCCACCAAGCCAGGCTGCGGGTCCCGCCTCCCAGCAGAGCTCCCCACCGGACTACAGCGCCGCATGGGCGGAGTACTACCGGCAGCAGGGCGCGTACTACGGACAGGGCGCGCAGCAGACACAGGCCCCGGGCCTTCAGGAACATTAGAGAGGACACGTTTTGTTGAAGATTTTGGAATCATtgagaggaagaaaacaaaccttTTCTAACAGAGGTTTATAGATTTGCAACGCCTTGAagacttttacttttttcttagtGAGAAACACTAGCTGTAGAATGACTTATacgatttaaaaaaacacaaaaacgaCAAAAAAAGAATTTCTAAATCAGGAACATTTAATTGTTACTAAAACTTGTGGACACCGTTATATCGAATGGACAATTTCCGGGATTCTTTTTGGGCTTGAGaactttttcctgtttttttttcttgttttttttttgtttatttttctttcctcaaaTTGAAATTAATACTCCAAAACGTGCCCCGGAGTTGTAACATTTCACAACgcaatataatctattttttcTAGTTCTGTTGCAATAAAGTAATTATGGGCTTAGCAGTCTTGAGTAAatgctgatttgttttgttcttttttttgacaaatgttttaagaatgTGTACAATTCGTGTaggttgctttttttttttccttttcctttttttttttttacataaaacattttaattctgtgaCATGAAACTGTGATCTTTGGTTACAGGAAAAGGTATTCTTTTGTTACATAGTACCGGGATTGGTGAGGGTAAATGGTCGATTCCTAATTTAATTCCtgttttgcagttgttttgttttcagtgtcatTTTATTGTACTCTGATTTAAAAAGGTGCAATATCTTATTTCACATCCGAAACAAAGACGGATTCTCTATTTCGACAGACTTTAACTGGTAGTTCTTACGATGAATTTTGTTTTAGGCGAGTGGAGATGATTTTTATGACATTGATCCGATCGGGGCACGGGGGGGCGGGGCATGGTTAGGTGCTGACTGTATTTTCTTGTAAGTTTTTTGCCTTTGATATCTTGTTAAACTATGTATGTGTGCACAGATACTTGactaaatactttatttaaagatattataTGAGTAAATCAAAGCGGCTTCTTCGGCGGAAGCGTCCCTCGTATGCGGGGGGGGGGAGACGCTCTCCCGCGGCCCTGGGACTGCGGCCCCCGTTCAGAGATCGCGAATGTTTGTGATTTGAAATTTGATGTTGCATCTTGagagcaaaaaaaaagtgtatcaGGTTTTTGAGTTTGTTTATTCTGTACATGAACCATTCAAGACTGCTAAGCCTCTGTTGGAGCCTACCTGTGTAATAATTAATAgtggtttttatattttaagtattacaAGAGAAGATGTCTGTTATTTGGTACAACCCAGCTCCCCCCCGAATACTCTCGAGTACACACTGTGGACTTCGGTAAAGTCCAATGCTAATAcctttttaattcataattttgtttctttctactGTGTGTGATCTAATATATGTCTGATTGATTAGTTACGAAATGAATCTAGTATTAACTGCATTGTGATAAATTTAAGTTGCCTAATGAAAAGGgatattataatttcaaaatgtttaattttagtgtttttttctctcgtgTACAGATAACcgtgtattaaaaaacaaacgcaaaagatttttttttttgtgtttttctgttgacctgatctgtttttgttttttgtttttagcacattccaatttgaattttttatttttcctcccaaAATATCCACGATCTGTCCATACTTGGAGCCCAGTGATTGGATTCGCGTAGCAGCCTAATGTTGCTAAcggcagatatatatatttataaatatatatatattccttcacttttattttactcACACTTTGCCATTTTACTCTATCTGTATTAAAATGTCCACAGATCTTTCTTGTGGTAAAAGTATAgaagtctttatttttgtaatgttttaaagatttGCTAGCTGCTGCAGGTCTGAGCGGTCTCTTCTCCCCTCGAGTTTTCTTCATGCTGTTGTACCCCTATGAGATTAAATCCGAAATTCTAAAACCAAA

Function

GO: NA

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019906 True 2274 mRNA 0.38 4 2632245 2636245

Neighbor

gene id symbol gene type direction distance location
AMCG00019908 fubp3,LOC106566971 coding upstream 580 2620970 ~ 2631665 (+)
AMCG00019909 NA coding upstream 14315 2611694 ~ 2617930 (+)
AMCG00019902 NA coding upstream 60528 2567816 ~ 2571717 (+)
AMCG00019903 NA coding upstream 67847 2562954 ~ 2564398 (+)
AMCG00019901 ass1 coding upstream 87496 2522528 ~ 2544749 (+)
AMCG00019905 prdm12b,LOC107688643,LOC105030201,LOC106587007,LOC107731029,LOC108423597 coding downstream 14692 2650937 ~ 2656033 (+)
AMCG00019904 exosc2,exos2,LOC106566956 coding downstream 21800 2658045 ~ 2663160 (+)
AMCG00019907 NA coding downstream 30460 2666705 ~ 2670013 (+)
AMCG00019910 NA coding downstream 106456 2742701 ~ 2768063 (+)
AMCG00019916 gsna,LOC107708352,LOC107595697,LOC107556937,LOC107686887 coding downstream 154528 2790773 ~ 2810001 (+)
G59467 NA non-coding upstream 451176 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 464805 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 468641 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 597451 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 835104 1796926 ~ 1797141 (+)
G59578 NA non-coding downstream 79283 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 151665 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 189346 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 247469 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 395633 3031878 ~ 3034341 (+)
AMCG00019884 NA other upstream 1523249 1074816 ~ 1108996 (+)
G59305 NA other upstream 2186715 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 326263 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 605063 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2187568 4823813 ~ 4856929 (+)
G60137 NA other downstream 2719527 5355772 ~ 5361863 (+)
G60132 NA other downstream 2722219 5358464 ~ 5359365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000205_01015472_01018688 NA coding CI01000205 null 1015101 ~ 1018688 (-)