AMCG00019908 (fubp3,LOC106566971)


Basic Information

Item Value
gene id AMCG00019908
gene name fubp3,LOC106566971
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2620970 ~ 2631665 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019908
ATGGCAGCCGTCGCGTTTATCTCCAGACCCGTCTCCCCTCCTTCACTGCGGTCCAGTGGTGCCACCCGACCTGTGCCCAGATACAGACCGCTGCTCAGTGCTGCCCTAGACCCTCCTGAGAAATGGGGATCTTGCCCggctctctTAGGTAACCAGCTCGGAGCAATGGTACATCAAAGGGCTATTATGACGGAAGACTTCAAAGTGCCTGATAAAATGGTTGGATTCAGTAAGTACACCTGGCTTTGTGGTTTTGGCGGGGTGGTGGTGGGTAGGTGGGGCGGGTGGTCTCTACGGCACCTCCGCCCCATAACGGTCGAGGTAGATttaggaggagagagagggcagtgCGAGGAGACGGGGATCGAAATGGTTACGCTGATCTGGAGGGTCGGGGCGAGAACGAGACTTATCGGAAGAGGGGGAGAACAGATCACGAGAATCCAGCTGGAGTCCGGCTGCAAGATCCAGATTGCGGCAGACAGCGGTGGCATGATGGAAAGACCCTGCACGCTGACCGGGACCCCCGAGAGCATCGAGCAGGCCAAGAGGCTGCTGGGGCAGATTGTGGACCGGTGTCGGAACGGACCCAGCTTCCACAGCGAGATGGATGGAAACAGCGCCATTCAGGAGATCCTCATCCCGGCCAGTAAAGTGGGGCTGGTCATCGGGAAGGGAGGGGACACGATCAAGCAGCTTCAGGAAAGAACGGGTGTGAAGATGATCATGATTCAAGACGGGCCCATGCCCACCGGCGCCGACAAGCCCCTGCGCATCACTGGAGACCCGTACAAAGTGCAGCAAGCCCGGGAGCTGGTGGTGGAGATCATCCGCGACAAGGATCAGGGCGACTTCAGAGGGGGCCGCAGCGACTTCGGGTCACGGCTGGGCGGCAGCAGTTTGGATGTGGCGGTCCCGAGATTTGCGGTGGGCATCGTGATTGGCCGGAATGGTGAGATGATCAAGAAAATTCAGAATGATGCCGGAGTCCGAATCCAGTTTAAACCAgAACTGGCCCGTATCGGGGCGTTTGACGATGGAGTAAATATGGGTCATCCCCAGGCCGGACTGGATCCCGTCTCCCTGTGGCTCCGTGGTGCTGACCTCCTCAGACAACTGTACGCTCAGGAGCGCGACGGATTCGGCGGTCCAGGGGGTCCCAGGGGCCGAGGCAGAGGCCGCGGAGAGTGGAACCTAGGGGCGCCCGGGGGTCTGCAAGAAGTGACCTACACGATACCCGCGGACAAGTGCGGCCTGGTGATCGGGAAAGGTGGAGAGACCATCAAGAACATCAACCAGCAGTCCGGGGCCCACGTGGAGCTGCAGAGGAACCCCCCGCCCAACACCGACCCCAACGTCCGGATCTTCTCCATCCGCGGGACCCCCCAGCAGATGGAGCTCGCCCGGCAACTCATCGACGAGAAGATCGGGGGCTCGGGAATGGGCGGAAGCAGTAGTTTCGGCCTGAACCCCTTCACTCAAGGACCGGCTACTCCACACCAAAACGGGCCGCAGACCTTCATGACGGGAGGGTGGGGCACTACGTACCAGACGTGGCAGCAGCAAGGCCAGCAGGACCCCAGTCACAATGGATCACAGACCGGACAGATGGACTATTCCAAAGCCTGGGAGAACTATTATAAAAAACTAGGCAAGTGCTGTGGAGAGCCGACTCCCGGTTACATCCAGCCAAAACAGAGAATCCGTTAA

Function

symbol description
fubp3 Predicted to enable RNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Orthologous to human FUBP3 (far upstream element binding protein 3).

NR:

description
PREDICTED: far upstream element-binding protein 3 isoform X2

GO: NA

KEGG:

id description
K13210 FUBP; far upstream element-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019908 True 1710 mRNA 0.60 15 2620970 2631665

Neighbor

gene id symbol gene type direction distance location
AMCG00019909 NA coding upstream 3040 2611694 ~ 2617930 (+)
AMCG00019902 NA coding upstream 49253 2567816 ~ 2571717 (+)
AMCG00019903 NA coding upstream 56572 2562954 ~ 2564398 (+)
AMCG00019901 ass1 coding upstream 76221 2522528 ~ 2544749 (+)
AMCG00019900 surf4,LOC103376134,LOC105890423,LOC101465012 coding upstream 111313 2497948 ~ 2509657 (+)
AMCG00019906 NA coding downstream 580 2632245 ~ 2636245 (+)
AMCG00019905 prdm12b,LOC107688643,LOC105030201,LOC106587007,LOC107731029,LOC108423597 coding downstream 19272 2650937 ~ 2656033 (+)
AMCG00019904 exosc2,exos2,LOC106566956 coding downstream 26380 2658045 ~ 2663160 (+)
AMCG00019907 NA coding downstream 35040 2666705 ~ 2670013 (+)
AMCG00019910 NA coding downstream 111036 2742701 ~ 2768063 (+)
G59467 NA non-coding upstream 439901 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 453530 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 457366 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 586176 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 823829 1796926 ~ 1797141 (+)
G59578 NA non-coding downstream 83863 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 156245 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 193926 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 252049 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 400213 3031878 ~ 3034341 (+)
AMCG00019884 NA other upstream 1511974 1074816 ~ 1108996 (+)
G59305 NA other upstream 2175440 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 330843 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 609643 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2192148 4823813 ~ 4856929 (+)
G60137 NA other downstream 2724107 5355772 ~ 5361863 (+)
G60132 NA other downstream 2726799 5358464 ~ 5359365 (+)

Expression


Co-expression Network