AMCG00019909


Basic Information

Item Value
gene id AMCG00019909
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2611694 ~ 2617930 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019909
GTCGCGTGTCTCGTGCGCGCCGGGCCAGTTTCCGCTTCCGGGGTCGGCgcgtgctgctgctgctgctcgctggtctggttttttttttttttcctcgcCGCCGCGCTGCTgcaggatgatgatgatggcgGAGCTGGTGCAGGGACAGGCCTCGGTGGCTCAGCCCGGACTCAAAGCAGACGGCTTCGCCGACGCTTTACACCGGGCCCGGCAGattgCTGCAAAAATGGGCGGTGACCCGATGCCACACATGAACAACTCCTCACCAGTTGTAGACCCCTCCATTTATGGCTATGGCGGTCAGAAGAGATCCTTGGAGGAAGGAGGCAGGAGGTGTCAGGCTGTGGTGTTTAAAAGCATTGTGAGGCAGGGCATAGTCTATGAGCATGAAGGCTTCTGGCCCCCGATACCACAGGGGGACTCGGGCACGTTGGCGTAG

Function

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019909 True 439 mRNA 0.60 4 2611694 2617930

Neighbor

gene id symbol gene type direction distance location
AMCG00019902 NA coding upstream 39977 2567816 ~ 2571717 (+)
AMCG00019903 NA coding upstream 47296 2562954 ~ 2564398 (+)
AMCG00019901 ass1 coding upstream 66945 2522528 ~ 2544749 (+)
AMCG00019900 surf4,LOC103376134,LOC105890423,LOC101465012 coding upstream 102037 2497948 ~ 2509657 (+)
AMCG00019895 NA coding upstream 122750 2484957 ~ 2488944 (+)
AMCG00019908 fubp3,LOC106566971 coding downstream 3040 2620970 ~ 2631665 (+)
AMCG00019906 NA coding downstream 14315 2632245 ~ 2636245 (+)
AMCG00019905 prdm12b,LOC107688643,LOC105030201,LOC106587007,LOC107731029,LOC108423597 coding downstream 33007 2650937 ~ 2656033 (+)
AMCG00019904 exosc2,exos2,LOC106566956 coding downstream 40115 2658045 ~ 2663160 (+)
AMCG00019907 NA coding downstream 48775 2666705 ~ 2670013 (+)
G59467 NA non-coding upstream 430625 2180603 ~ 2181069 (+)
G59460 NA non-coding upstream 444254 2164521 ~ 2167440 (+)
G59459 NA non-coding upstream 448090 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 576900 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 814553 1796926 ~ 1797141 (+)
G59578 NA non-coding downstream 97598 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 169980 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 207661 2825591 ~ 2826637 (+)
G59646 NA non-coding downstream 265784 2883714 ~ 2885416 (+)
G59700 NA non-coding downstream 413948 3031878 ~ 3034341 (+)
AMCG00019884 NA other upstream 1502698 1074816 ~ 1108996 (+)
G59305 NA other upstream 2166164 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 344578 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 623378 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2205883 4823813 ~ 4856929 (+)
G60137 NA other downstream 2737842 5355772 ~ 5361863 (+)
G60132 NA other downstream 2740534 5358464 ~ 5359365 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_029776 fubp3 coding NC_007116.7 CM002889.2 872299 ~ 927772 (+)
grasscarp (Ctenopharyngodon idella) CI01000229_00380441_00386904 NA coding CI01000229 null 380067 ~ 387037 (+)