AMCG00019911 (rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986)


Basic Information

Item Value
gene id AMCG00019911
gene name rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2772569 ~ 2781304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019911
ttttttttttttttaaacaatggttGAGTAATTTggtaaaatatatcaattaatatcTGCCTTTGTTTAGCTTGGTTTTATGAATTTAAACATGCACTTTATAGCGTTGTTTGCTCAGAGCCCTTCCGGCTGCCTTCAATACCATTACGATGCAGATAATTTCTGGCAATCATTATCTTGGCCCGTTTGAAAGGAGCAATGTGCCAGTGTTTGCATTCTTTAATATCAAACACCATTTCCACTAATCCAGTTGTACAGACACACCTTGTAGCCACTGATTCCACATGGAAAGTGTTTCAGTATTTCAGAGTGGGATGAAATAAATATTCCTTTACACTGTttctaataatacaatttgacgAAACCAGGACTTCAGCCCACAGATGAAAAGGCAAGATTGCAGTGAGATTGTCTGTTCCCTGATCCCCTGTCTGACGATGCTGTCAAACTAGTTAAAAGTAACAGGGCAGCACTCTGCCTGGAGGTCTCGGCCTGTTGTCTTTGTAAACCTGTACAACATGTACAACGATGAACTGAAGTACCCTAACCAGTCTCTGTCTGATGTGCAGTGGGCATGCAAGGGAGCTCTGGTGTTCCTGGGTTTTAACAAACTATTTCTGCCAACCCTGgcaaatttttattttgttaaagaatAAATTGAAGCCATTtcttgaacttttttttaatggatacgGCCGTGACCTAGTGTTTTAGATGTAAAAGGACAAATGTGCGGTCTGTGTTCATCTGATCTTGATGGAGTTCTTGCAGAGAGGTTGTAATGAGATTAGGCGAGGAGCTCATTCAAGAAAGTCCATCTTGTCCAGAAATCTCGGTCAGGAGCTGCCTGTCACAGGGGTGGTATTGGTAGCACATGCTTTTCTGAAGACGGCCATCCTGCACCAGAAACCCTGGTGTCCGTATCGTGCCTGAGCTGCTGTTGTGTGCAGAATCTCATTTACATCTGATGAAACCCCGGGGTAACATTTAAGTAATTGCATCTGTCTCTTATGAATTGTGGTGTTGTCTTCTGATATGCAGTGGCAGACATGGCCATTGAATAGTGCATCGCAGCTGCGTCCGTCCACCACGGGATATATCACAGCATGAGCAATCAGTTAAGCAATGCACATCTATcataaatcaaatatgaaatacttCTCATATGTAAGAATTTCCAAATAATGTCCAGGTTCCCGTCGAAGAATGTCTATGTTCAGCAAAGCCTGCCAGTGTTTTGTAATTAAAGTGTTTCTCCAGAAGTCAATGTGTGCTGCAAGTGCGGGAGACTAAGCACCAAAAATCAAGATGCCCAGAAGGCCTCTCAACTCCAGGCTCTTCTTTcgtcaatatttattttcctgttcttaGACCAGACTTCGTGCTTGGGACCCAGTGAAGACATGCTCCCACGTTCTACAGAACTCATTTGGACTTGCATGACCTATCACCCCTGCTGTGTTACGGGAGGTGTGGTAACACTCACGGGCAGCCGGCCGGGTGTGGCAGCACACGGCACGGGTTTATTCTCGCCTGCGTTTTCTGCTCAGCCCTGTCTTTGAAGTCCTGTTGACTCATCGGCTGTTGCCGGGCCGCCTGGAGGTTTTGCTGTTGCAATCGCACGAGACTTGTTGTTGCAGGAATAACAATACTAACGACtttgtgtttttccctttcAGAGCCACAATGGCCACCGCACCGTACAACTACTCCTACATCTTCAAATATATCATCATCGGGGACATGGGAGTAGGAAAATCTTGTTTGCTTCACCAATTCACAGAAAAGAAATttATGGCCGACTGTCCTCACACAATCGGCGTGGAGTTCGGCACGAGGATAATCGAAGTCAGCGGGCAGAAGATCAAGTTGCAGATCTGGGACACAGCGGGCCAGGAGCGTTTCAGAGCCGTGACGCGGAGCTACTACAGAGGGGCGGCCGGGGCGCTGATGGTCTATGACATCACCAGGAGAAGCACATACAACCACCTTAGCAGCTGGCTGACAGACGCGAGAAATCTCACCAACCCCAACactGTGATCATTCTCATAGGAAACAAGGCAGACCTGGAGGCGCAGCGGGATGTGACGTACGAGGAGGCCAAGCAGTTTGCAGAGGAGAACGGTCTGTTATTCCTGGAAGCAAGTGCAAAAACGGGCGAGAACGTGGAGGACGCATTCCTGGAGGCGGCGAAGAAGATCTACCAAAACATTCAGGACGGCAGCCTGGACCTGAACGCAGCCGAGTCGGGGGTACAGCACAAGCCCTCGGCCCCCCAGGGCGGCCGGCTAACCAGCGACCCACAGCCCCAGAGGGAAGGGTGCGGCTGCTAATGAGCGGCACCCCCTCCCTCTGCCCCCGGGGGCCGCAGCCGCCGCGCCTCCCCCCgcggcgagagagagagagtgggtggcGCGCACTGGgagcgagagagcgagggaTGGGCCTGGCTGTCGACTCCTCCCGCCTCCATCCATCCTTCC

Function

symbol description
rab14 Predicted to enable GTPase activity. Predicted to be involved in Golgi to endosome transport; intracellular protein transport; and phagolysosome assembly involved in apoptotic cell clearance. Predicted to act upstream of or within defense response to bacterium; endocytic recycling; and phagosome maturation. Predicted to be located in Golgi apparatus and endosome. Predicted to be active in early endosome and phagocytic vesicle. Is expressed in several structures, including axis; nervous system; neural tube; notochord; and trigeminal placode. Orthologous to human RAB14 (RAB14, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-14 isoform X1

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0032880 regulation of protein localization biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045176 apical protein localization biological_process
GO:0007589 body fluid secretion biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0032456 endocytic recycling biological_process
GO:0009790 embryo development biological_process
GO:0030670 phagocytic vesicle membrane cellular_component
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005770 late endosome cellular_component
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005829 cytosol cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0055037 recycling endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0097208 alveolar lamellar body cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function

KEGG:

id description
K07881 RAB14; Ras-related protein Rab-14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019911 True 2484 mRNA 0.49 7 2772569 2781304

Neighbor

gene id symbol gene type direction distance location
AMCG00019912 NA coding downstream 30401 2709962 ~ 2742168 (-)
AMCG00019914 NA coding downstream 66791 2705329 ~ 2705778 (-)
AMCG00019913 NA coding downstream 82252 2689902 ~ 2690317 (-)
AMCG00019899 NA coding downstream 292860 2463636 ~ 2479709 (-)
AMCG00019892 gpsm1,LOC106563264 coding downstream 525409 2226804 ~ 2247160 (-)
AMCG00019919 stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899 coding upstream 30047 2811351 ~ 2825112 (-)
AMCG00019918 NA coding upstream 45019 2826323 ~ 2833406 (-)
AMCG00019923 NA coding upstream 102976 2884280 ~ 2909373 (-)
AMCG00019922 NA coding upstream 139737 2921041 ~ 2942635 (-)
AMCG00019927 NA coding upstream 189540 2970844 ~ 2989870 (-)
G59556 NA non-coding downstream 196899 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 551375 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 580022 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1110390 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1278596 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 709414 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 815901 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 858734 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 864735 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 889719 3671023 ~ 3675014 (-)
G59545 NA other downstream 265549 2494899 ~ 2507020 (-)
G59530 NA other downstream 291770 2454911 ~ 2480799 (-)
G59505 NA other downstream 445154 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 1186569 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 2199742 535831 ~ 572827 (-)
G59712 NA other upstream 250552 3031856 ~ 3034335 (-)
G59720 NA other upstream 326497 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 384933 3166237 ~ 3185965 (-)
G59806 NA other upstream 698478 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 2231140 5012444 ~ 5061512 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031716 rab14l coding NC_007116.7 CM002889.2 72172299 ~ 72178739 (-)
grasscarp (Ctenopharyngodon idella) CI01000059_08181323_08184538 BRAFLDRAFT_57441, RAB14L, RAB14 coding CI01000059 null 8181124 ~ 8185308 (+)