AMCG00019918


Basic Information

Item Value
gene id AMCG00019918
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2826323 ~ 2833406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019918
GTTTCTATAGCAATGATGCATTTCCGGATAACCTTTAACCCCTACATACAACTTCCGGTATTTTCGCTTTGCGGGAATCGCGGTCTGCGACACGCTGTGACTGTAATCATGGTGAACAAGaGGGAAGAAGCGCAGATCGTACCTGGGAGTGAAACCATCTCCCCCAAGAagcacaagaagaagaagaagaagaagaaagacgAGCAGATGGACAACAATGTGACGGGCATCCTTTTAGAAGTGAATCCCTCCTCCCCTCTGCTGTTTCTGGATGATGGCGAGGACTTTGTTGTGCCGGACGAGCAGGAGACAGGGGTGGCGATGGGGGCGTCTGAAGACGGAGAGGGGCGGGAGCAGGGGGTGGCTGCAAAAAAGCACaaagccaaaagaaaaaaacgggAAGCAGAGGGAGATGTTGAGCAGCTGGAGGATGTGGACTTATCGGTCCTTTCGGGCGGGCTGGAGCCAACGcccaagaaaaataagaaaaaacatagAGATGGGGTCGAAAATGTTGACCTAGAAGTGAATGGGGaagtggtggaggaggaggaaattaagaagaagaagaaaaagaagaaaaggcacCCAAGTGTGGCTGCCAAGGCGGAGCTGGGAAACGGCGGGTATTTGGACACTTTGTCCGAGACGCTGGTGTTTAAGGAAGACCCAGAGCTCGAGGGGGAGACACAGGTGTGGGTGGACCCCCGAGAGATGCCAGAGGACCAGTGGCAGAGGCGGactgagctggagcaggcgggGGCGGTGGTAAGCTGCAACATTGTGTCatcagaaaagaagaagaagaagaggaagaaaaaagagcAGCAGGACGCAGGGAATGAGGACCAGGGAATGAAAAACATGAAGGAAACGAGGAAGAACCAGCAGACCATGATTGAGCTGTGTTGGGAATCtgggaagaagaagaggaagaagcagcagcagcaggaggaagaggaagagcagCCGAATGCAGGGAGTGCGGACCAGCAGACCGCAATGGGGTTCTGTGTGGAATctgggaagaagaagaagaagaggaagacgAAGGAGCACCAGGAGGCGGAGGAAGAGCAGCAGAAAGCAGGGAGTGCGGACCAGCAGACCGCAATGGACTTCGGTGGTGAATctgggaagaagaagaaaaagaagatgaaGGAACGGCAGCTGCAGAAGGAGGAAGAGCAAGAGCTGCCAAATGCAGGGAGTGCAGAACTGCAGGCCGGATTCGATTTGTTTTGGGAATCTGGCGTCGATAGCGACGTTGAAAGAAAGAAGGTGAAGGTCCAAGAGCACAACATGGAGAGATACATCGCCGAGCTCAAAGAGTTCATCCCCAATGTGGAGCAGAGATGCCACAGTGACATCATTAGGATGGTGGTGTACGACCTGGACCGGTTTAGGCAGTTCAAGCAGCAAGGAATTGCCATCAAGCGTGGAAGATACAGCGTGCAGGAGAACGATCTTCTCCGCCGGAACGTCTTGGACTTCCTCCTCCTGACGGGGCTGGACAGTCCGACCAAGCTGTTCTTTCCTTCGCGATACCCAGAGGAGAAGGCCATGATCAAGAATCTGAAGACGAAGCATAAATTCCACGACCAGATTGCGGTCGACATTCCCAGGCCTTGGCACGACATCTACTCGAGGGGAAGGAAGATCTTTGACTCCTTGCACTATAAGGGCAGGTTCTCCAGTAAAGATCTGGACATGCTGAAGAAGCTCCACACCATGTACGGCAACAACTGGAGCAAGATCTCCGAGTCCAGCAAAGGTGAATGGACCGAGACGGAGCTCACGCGTCTGGTGAAGGCCATCAGGGAGTATCTGGTGTCCCAGCTGGACCCCGAGGAGGCTGCCAAGGGGCAACACGCCACCATCCCCCGCGAGAAACTCTACAAAAAGATCCCATGGACAGAGGTGGCCCTCAAAGTGAAAACACGCAGCTGGACCAAGTGCCGGGTGAAGTGGATGTCCGTCCTAAAGGCCAGGATGTCGTTTGGGCAGAACTTGTATAAAGGCCTGCAATCGTTTCAGGccaaaataaacttaattgaaAAgttGCATGCACTGGAAGTTGAAGATGTCTCGGACGTGAACTGGGACGACCTTACGGACACCATTGGGGACGTCCCTCCCTCCTATGTCCAAGCGAAGTTCTACAAGCTGAAGGTGACCCAGGTTCCTCTGTGGCACACCATGTCTTTTGCGGATATTGTGGACCATCTCTACTACAAAACTCTCCCCGTCCTCAAAGCGACAGTTTCGCGGATGGTACCCTGTTCAGACGGCCCTGCTGTCCAGAATCTGGATACCTACCTGTTGTCGGACATTTTCCACGAGGACTTCTTGGCGGACGGCACTTTAAATGAGCTGCCAGAAGACAGTCTGTTGGGGGAGGATGACGGCCTGCCCGTGAAATGGTCTGATCCTGAATTCAGCATGTGAAAACGGGGCTCCTCTAGCTGCGCATGTTTCTAATCTGGGCACCCGCCGTTTtcctatatacagctctggaaaaaatgaagaga

Function

GO: NA

KEGG:

id description
K15225 TTF1; transcription termination factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019918 True 2531 mRNA 0.53 11 2826323 2833406

Neighbor

gene id symbol gene type direction distance location
AMCG00019919 stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899 coding downstream 1211 2811351 ~ 2825112 (-)
AMCG00019911 rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986 coding downstream 45019 2772569 ~ 2781304 (-)
AMCG00019912 NA coding downstream 84155 2709962 ~ 2742168 (-)
AMCG00019914 NA coding downstream 120545 2705329 ~ 2705778 (-)
AMCG00019913 NA coding downstream 136006 2689902 ~ 2690317 (-)
AMCG00019923 NA coding upstream 50874 2884280 ~ 2909373 (-)
AMCG00019922 NA coding upstream 87635 2921041 ~ 2942635 (-)
AMCG00019927 NA coding upstream 137438 2970844 ~ 2989870 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding upstream 200985 3034391 ~ 3054507 (-)
AMCG00019933 tbc1d13,LOC106562828,LOC106570453 coding upstream 278689 3112095 ~ 3129430 (-)
G59556 NA non-coding downstream 250653 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 605129 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 633776 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1164144 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1332350 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 657312 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 763799 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 806632 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 812633 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 837617 3671023 ~ 3675014 (-)
G59545 NA other downstream 319303 2494899 ~ 2507020 (-)
G59530 NA other downstream 345524 2454911 ~ 2480799 (-)
G59505 NA other downstream 498908 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 1240323 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 2253496 535831 ~ 572827 (-)
G59712 NA other upstream 198450 3031856 ~ 3034335 (-)
G59720 NA other upstream 274395 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 332831 3166237 ~ 3185965 (-)
G59806 NA other upstream 646376 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 2179038 5012444 ~ 5061512 (-)

Expression


Co-expression Network