AMCG00019919 (stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899)


Basic Information

Item Value
gene id AMCG00019919
gene name stom,LOC103154398,LOC103473970,LOC102236904,LOC108278899
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2811351 ~ 2825112 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00019919
GCGCCACGGACGGCACGGACTGCGGGGACATGAAGCCCGTGAGCAGGCGGGAGCGCCAGGCAGGCGTTCCTCGGTTCACCCAGGAGGATTTTGACGCAGAGCTTGAGGATGCTGATGGGAAAATTGGTCTCTGTGGGATGCTGCTGGTGGCCTTTTCTGTCCTGCTGACGCTGGTCACTCTGCCCATCTCCATATGGATGTGCATCAAGATCGTGAAAGAGTATGAACGCGCCATTATCTTCCGACTGGGGCGGATCGTGCGCGGGGGAGCCAAAGGACCAGGTCTGTTCCTCATTCTGCCATGCACCGACAGCTTCATCAACGTGGACATGCGCACCATCACCTTTGATATCCCCCCCCAGGAGGTGTTGACCAAGGACTCGGTGACGGTGTGCGTGGACGGCGTGGTTTACTACCGGGTGCAGAACGCCACCCTGGCAGTGGCTAACATCACCAATGCCGATGCCGCCACCCGGTTGCTGGCCCAGACCACCCTGCGCAACGTCCTGGGCACCAAGAACCTGTCTGAGATCCTGTCCGATCGCGAGGAGATCGCCCACAGCATGCAGTCCACCCTGGATGACGCAACCGATGACTGGGGCATCAAGGTGGAGCGCGTGGAGATCAAGGACGTCAAGTTGCCCCTCCAGCTGCAGAGAGCCATGGCTGCGGAGGCGGAGGCGACCCGCGAAGCCCGGGCCAAGGTGATCGCAGCCGAAGGTGAGATGAACGCCTCACGTGCCCTGAAGGAGGCCTCTATGGTGATCGCCGAGTCGCCCTCCGCGCTGCAGCTGCGCTACCTGCAGACGCTCAACACCATCGCGGCCGAGAAGAACTCCACCATCATCTTCCCACTGCCCATCGACATTATGCAGGGGCTGATGGGCAGCAGGCACTGAGCGGGGCGGCCCAGCACCCCCGAGCCGACTGCCCATTTATCTCAGTTGTGAAACCCAGAGCTTCGCTTATTTGTAACCCGCCGCCGCGGTCGGGTCTGTTGCTCGGTGCGCTGGCTGGGGCGGGACGATTGTTTTTGCTGGTGGCCTTCAGTCCGTTCTCCTGTCAGCTTGACTGTTCAACCTTGTTGTTGGTGTGAGGAGGGCGGGCAGAGGGGTCTGGTAAAAAGGGATTTCCCAATTATCCTTCTAAAACGGTGCTTCCAAGTGCTCAGTGCTCAGATCTGGCTTAAAACTGAGAGCTAAAAGTTCAAACATATCTGCAATTTGAGATTTTAAGGTTAATTGCTCATCAGGgcttgattttatgtttttaattgggaTAATATAAGCGGTTTAAATCATGAACACATTTTGTCTTTGAGGATTTCCAGTTGACTTGCTCAGCTGTGCTGCCGTTTTGAATTAAATCTCCATTGGGACGGTAGTTGACTCCCTAAATCCATCCATCTATGAAACACACGGACCTGCATTAGGGTTGTGTGTGGCAGGAGACCCTTTCCCTTAGTGTAGCTGGAGAGGTTTCAGCGCCGCCCACAGCATAGCAAGGCAAGGCATGTTGGGAATTCCCCCCCAACTGTGGCGTCAAAGCTTTATGACCAGAAAGCCCCTCAGTTCAGAGCACAGGTTGaaggattgtttattttttgttacttttctgCACATCTCTATCCCTGTATTACTTTCAATGGTAAATAAttgcttatttaatattaattatatatgtgtacCCAGCCAGGCATACGATTGTCTTTCAA

Function

symbol description
stom Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Predicted to be active in plasma membrane. Orthologous to human STOM (stomatin).

NR:

description
PREDICTED: erythrocyte band 7 integral membrane protein-like isoform X1

GO: NA

KEGG:

id description
K17286 STOM; erythrocyte band 7 integral membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00019919 True 1714 mRNA 0.54 8 2811351 2825112

Neighbor

gene id symbol gene type direction distance location
AMCG00019911 rab14,Rab14,LOC105889591,LOC101069277,LOC107566859,LOC103390174,LOC103045876,LOC108259986 coding downstream 30047 2772569 ~ 2781304 (-)
AMCG00019912 NA coding downstream 69183 2709962 ~ 2742168 (-)
AMCG00019914 NA coding downstream 105573 2705329 ~ 2705778 (-)
AMCG00019913 NA coding downstream 121034 2689902 ~ 2690317 (-)
AMCG00019899 NA coding downstream 331642 2463636 ~ 2479709 (-)
AMCG00019918 NA coding upstream 1211 2826323 ~ 2833406 (-)
AMCG00019923 NA coding upstream 59168 2884280 ~ 2909373 (-)
AMCG00019922 NA coding upstream 95929 2921041 ~ 2942635 (-)
AMCG00019927 NA coding upstream 145732 2970844 ~ 2989870 (-)
AMCG00019928 rgl4,ralgds,LOC105909371,LOC106562829,LOC107694528 coding upstream 209279 3034391 ~ 3054507 (-)
G59556 NA non-coding downstream 235681 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 590157 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 618804 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1149172 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 1317378 1493686 ~ 1493973 (-)
G59810 NA non-coding upstream 665606 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 772093 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 814926 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 820927 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 845911 3671023 ~ 3675014 (-)
G59545 NA other downstream 304331 2494899 ~ 2507020 (-)
G59530 NA other downstream 330552 2454911 ~ 2480799 (-)
G59505 NA other downstream 483936 2324288 ~ 2327415 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 1225351 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 2238524 535831 ~ 572827 (-)
G59712 NA other upstream 206744 3031856 ~ 3034335 (-)
G59720 NA other upstream 282689 3107801 ~ 3111347 (-)
AMCG00019942 NA other upstream 341125 3166237 ~ 3185965 (-)
G59806 NA other upstream 654670 3479782 ~ 3480109 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 2187332 5012444 ~ 5061512 (-)

Expression


Co-expression Network